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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAATCATGGCGGATGAAACACCAAATGAGATGAAGGAGGAGGTTCCAGAAgtgagttcattttcccgttgattatctgtaacttagacaatgctttcccactgtttttgcttaattgggtgcaaggccataaaattaggttttaaaagtt...

Basic information

species Glycine max
transcript GLYMA14G38600.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10238650|gb|BE807538.1|BE807538
EST:     CAATCATGGCGGATGAAACACCAAATGAGATGAAGGAGGAGGTTCCAGAA                         ATTGTTCCTTTTGATC
genomic: CAATCATGGCGGATGAAACACCAAATGAGATGAAGGAGGAGGTTCCAGAAgtgagttcat ... taaatcacagATTGTTCCTTTTGATC
EST: gi|193589805|gb|FK545169.1|FK545169
EST:     CAATCATGGCGGATGAAACACCAAATGAGATGAAGGAGGAGGTTCCAGAA                         ATTGTTCCTTTTGATCCTACCAAG
genomic: CAATCATGGCGGATGAAACACCAAATGAGATGAAGGAGGAGGTTCCAGAAgtgagttcat ... taaatcacagATTGTTCCTTTTGATCCTACCAAG
EST: gi|7284242|gb|AW596838.1|AW596838
EST:     CAATCATGGCGGATGAAACACCAAATGAGATGAAGGAGGAGGTTCCAGAA                         ATTGTTCCTTTTGATCCTACCA
genomic: CAATCATGGCGGATGAAACACCAAATGAGATGAAGGAGGAGGTTCCAGAAgtgagttcat ... taaatcacagATTGTTCCTTTTGATCCTACCA
EST: gi|193492254|gb|FK453950.1|FK453950
EST:     CAATCATGGCGGATGAAACACCAAATGAGATGAAGGAGGAGGTTCCAGAA                         ATTGTTCCTTTTGATCCTA
genomic: CAATCATGGCGGATGAAACACCAAATGAGATGAAGGAGGAGGTTCCAGAAgtgagttcat ... taaatcacagATTGTTCCTTTTGATCCTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAATCATGGCGGATGAAACACCAAATGAGATGAAGGAGGAGGTTCCAGAAgtgagttcattttcccgttgattatctgtaacttagacaatgctttcccactgtttttgcttaattgggtgcaaggccataaaattaggttttaaaagtt

- - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctttccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgggtg