Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCCATTGTTTGAGAAGGTATTGAGTGCCAGTGATGCAGGTCGAATTGGTCGACTTGTTCTCCCAAAATCTTGTGCTGAGgtatgcctctattaatgaaatatttatctcaatcttttagtacacatgtatatgcagttcttttcaataactttttattaaagaaaaatatcatcaccctgtaattgcagcacatttaatatgacaatttgtacctgaatttcaggcttactttcctcctatttcacag

Basic information

species Glycine max
transcript GLYMA14G38490.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G38490.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os07g48200.1 (Oryza sativa), 5'ss of exon 5
-----------------TGCCATTGTTTGAGAAGGTATTGAGTGCCAGTGATGCAGGTCGAATTGGTCGACTTGTTCTCCCAAAATCTTGTGCTGAGgtatgcctctattaatgaaatatt-tatctcaatcttttagtac--acatgtatatgcagtt--cttttcaataactttttattaaagaaaaatatcatcaccctgtaattgcagcacatttaatatgacaatttgtacctgaatttcaggcttactttcctcctatttcacag
                 | ||  |||||||||||||  | || |||||||||||||| || || || || |||||||| |||||| | ||||| |||||||   | | || |  |  | || |   ||   ||  |  ||   | || |   ||  |||  ||  | | | | || |  ||   | |  ||||   |                                                                          
TTCAAATTCCACCATTGTCCCCCTGTTTGAGAAGGTTCTAAGCGCCAGTGATGCAGGCCGCATAGGGCGCCTTGTTCTACCAAAAGCCTGTGCGGAGgtatttttttgttcacaaccttttgtggttctgcctcctgttaataaaattttagtgttgttacctcattactgatttatcgtttttgtatcatattccc--------------------------------------------------------------------------

upper sequence: GLYMA14G38490.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G172621_T01 (Zea mays), 5'ss of exon 5
-----------------TGCCATTGTTTGAGAAGGTATTGAGTGCCAGTGATGCAGGTCGAATTGGTCGACTTGTTCTCCCAAAATCTTGTGCTGAGgta--tgcctctattaatgaaatatttatctcaatcttttagtacacatgtatatgcagttcttttcaataactttttattaaagaaaaatatcatcaccctgtaattgcagcacatttaatatgacaatttgtacctgaatttcaggcttactttcctcctatttcacag
                 | |||||||||||||||||  ||||||| ||||||||||| || || || || |||||||| |||||| ||||||||||||||  | |  |  ||  |    |   | |    || ||||  |  | || |   || | ||   ||||| || || ||   |||||  |  |  | ||                                                                         
TTCAAATTCCACGATTGTTCCATTGTTTGAGAAGGTCCTGAGTGCGAGTGATGCAGGCCGCATAGGGCGCCTTGTTCTTCCAAAAGCTTGTGCTGAGgtaacttcagcatttgtttgggtccctttaagtatgtttttat-tatatattgctg-atttgccttcaaaaagttgtttggaaagagcatcaaaagcatttg---------------------------------------------------------------------

upper sequence: GLYMA14G38490.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G158162_T03 (Zea mays), 5'ss of exon 5
-----------------TGCCATTGTTTGAGAAGGTATTGAGTGCCAGTGATGCAGGTCGAATTGGTCGACTTGTTCTCCCAAAATCTTGTGCTGAGgtatgcctctattaatgaaatatttatctcaatcttttagtacacatgtatatgcagttcttttcaataactttttattaaagaaaaatatcatcaccctgtaattgcagcacatttaatatgacaatttgtacctgaatttcaggcttactttcctcctatttcacag
                 | |||||||| ||||||||  ||||||| ||||||||||| || || || || |||||||| |||||| ||||||| ||||||    |          || || | | |   |   ||   | | || || |     || |||| | |   | ||    |  |    || |  ||  ||   | ||                                                               
TTCAAATTCCACAATCGTTCCATTGTTCGAGAAGGTCCTGAGTGCGAGTGATGCAGGCCGCATAGGGCGCCTTGTTCTTCCAAAAGCTTGTGCCGAGgtaacttt----------aacatctgtttggcttccttttcata-atttaaacatgtttttttttattgtatattgccgattgcctgat-ttgtcttccaaaagttatttgg---------------------------------------------------------

upper sequence: GLYMA14G38490.1 (Glycine max), 5'ss of exon 2
lower sequence: AT2G30470.1 (Arabidopsis thaliana), 5'ss of exon 5
-----------------TGCCATTGTTTGAGAAGGTATTGAGTGCCAGTGATGCAGGTCGAATTGGTCGACTTGTTCTCCCAAAATCTTGTGCTGAGgtatgcctct-attaatgaaatatttatctcaatcttttagtacacatgtatatgcagttcttttcaataactttttattaaagaaaaatatcatcaccctgtaattgcagcacatttaatatgacaatttgtacctgaatttcaggcttactttcctcctatttcacag
                 | ||  | ||||||||     | |||||||||||||| ||||| |||||||| || ||||| |||||| | ||||| ||||||    ||  |||  |    |  |    |   |  |     | | || | | |  |||| |     ||   | |  |||     | |                                                                                  
TTTGAATTTGAACATTGTACCTCTCTTTGAGAAAACTCTTAGTGCCAGTGATGCTGGTCGCATTGGTCGTCTAGTTCTTCCAAAAGCCTGTGCAGAGgtaaatttcccattcctatggtgatgtcttttcttgtccttgaaatattt-tgtagagttatgactgatg--tctgcattggtatatag---------------------------------------------------------------------------------

upper sequence: GLYMA14G38490.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv06s0004g08100.t01 (Vitis vinifera), 5'ss of exon 5
-----------------TGCCATTGTTTGAGAAGGTATTGAGTGCCAGTGATGCAGGTCGAATTGGTCGACTTGTTCTCCCAAAATCTTGTGCTGAGgtatgcctctattaatgaaatatttatc-tcaatcttttagtacacatgtatatgcagttcttttcaataactttttattaaagaaaaatatcatcaccctgtaattgcagcacatttaatatgacaatttgtacctgaatttcaggcttactttcctcctatttcacag
                 ||||||| || ||||||||  ||||||| |||||||| ||||||||||||||  | || ||||||||| | |||||||| ||| |  |  |      || || | ||| |||||   || ||   | |||||    || |  | | | | | ||| |      | |   | |  |  |  |  |  || |  |  | |||    | |                                           
TTTGAATTCCACCATTGTGCCATTATTCGAGAAGGTTCTGAGTGCTAGTGATGCTGGTCGAATTGGTCGTTTGGTCCTCCCAAAAGCATGTGCTGAAgtaagttttca-----aaagtagtcatcctcaatacctttgt-ttcttgtatgc-tagcttgtgttatttattttgt------ggaggtttttcttccttttcatatgtataaactgtaagtcaatacag----------------------------------------