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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCCGCGGCGGTGGACCCGGTCGAACCGGAGAAGGTTCTTGAAGTTGCCAGCTCGCACGGCCTCACTCTCAAATTCGTCCTCACCACCCACCATCACTGgtatggtacccttttcaaccacctctttctaagtaacttgttcactatgttgtttttttttttttttatgtgacag

Basic information

species Glycine max
transcript GLYMA14G36610.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209714894|gb|BW682059.1|BW682059
EST:     AGCTCGCACGGCCTCACTCTCAAATTCGTCCTCACCACCCACCATCACTG                         GGATCATGCTGGTGGAAACGACAAGATAAAGCAGCTGGTGCCAGGAATCAA
genomic: AGCTCGCACGGCCTCACTCTCAAATTCGTCCTCACCACCCACCATCACTGgtatggtacc ... tatgtgacagGGATCATGCTGGTGGAAACGACAAGATAAAGCAGCTGGTGCCAGGAATCAA
EST: gi|254347199|gb|GR856869.1|GR856869
EST:     AGCTCGCACGGCCTCACTCTCAAATTCGTCCTCACCACCCACCATCACTG                         GGATCATGCTGGTGGAAACGACAAGATAAAGCAGCTGGTGCCAGGAATCAA
genomic: AGCTCGCACGGCCTCACTCTCAAATTCGTCCTCACCACCCACCATCACTGgtatggtacc ... tatgtgacagGGATCATGCTGGTGGAAACGACAAGATAAAGCAGCTGGTGCCAGGAATCAA
EST: gi|10847409|gb|BF070096.1|BF070096
EST:     GCTCGCACGGCCTCACTCTCAAATTCGTCCTCACCACCCACCATCACTTG                         GGATCATGCTGGTGGAAACGACAAGATAAAGCAGCTGGTGCCAGGAATCA
genomic: GCTCGCACGGCCTCACTCTCAAATTCGTCCTCACCACCCACCATCAC-TGgtatggtacc ... tatgtgacagGGATCATGCTGGTGGAAACGACAAGATAAAGCAGCTGGTGCCAGGAATCA
EST: gi|4283221|gb|AI440629.1|AI440629
EST:     AGCTCGCACGGCCTCACTCTCAAATTCGTCCTCACCACCCACCATCACTG                         GGATCATGCTGGTGGAAACGACAAGATAAAGCAGCTGGTGCCAGGAATCAA
genomic: AGCTCGCACGGCCTCACTCTCAAATTCGTCCTCACCACCCACCATCACTGgtatggtacc ... tatgtgacagGGATCATGCTGGTGGAAACGACAAGATAAAGCAGCTGGTGCCAGGAATCAA
EST: gi|27426743|gb|CA938263.1|CA938263
EST:     AGCTCGCACGGCCTCACTCTCAAATTCGTCCTCACCACCCACCATCACTG                         GGATCATGCTGGTGGAAACGACAAGATAAAGCAGCTGGTGCCAGGAATCAA
genomic: AGCTCGCACGGCCTCACTCTCAAATTCGTCCTCACCACCCACCATCACTGgtatggtacc ... tatgtgacagGGATCATGCTGGTGGAAACGACAAGATAAAGCAGCTGGTGCCAGGAATCAA
EST: gi|151406931|gb|EV276746.1|EV276746
EST:     AGCTCGCACGGCCTCACTCTCAAATTCGTCCTCACCACCCACCATCACTG                         GGATCATGCTGGTGGAAACGACAAGATAAAGCAGCTGGTGCCAGGAATCAA
genomic: AGCTCGCACGGCCTCACTCTCAAATTCGTCCTCACCACCCACCATCACTGgtatggtacc ... tatgtgacagGGATCATGCTGGTGGAAACGACAAGATAAAGCAGCTGGTGCCAGGAATCAA
EST: gi|192331092|gb|FK020312.1|FK020312
EST:     AGCTCGCACGGCCTCACTCTCAAATTCGTCCTCACCACCCACCATCACTG                         GGATCATGCTGGTGGAAACGACAAGATAAAGCAGCTGGTGCCAGGAATCGA
genomic: AGCTCGCACGGCCTCACTCTCAAATTCGTCCTCACCACCCACCATCACTGgtatggtacc ... tatgtgacagGGATCATGCTGGTGGAAACGACAAGATAAAGCAGCTGGTGCCAGGAATCAA
EST: gi|209706270|gb|BW676285.1|BW676285
EST:     AGCTCGCACGGCCTCACTCTCAAATTCGTCCTCACCACCCACCATCACTG                         GGATCATGCTGGTGGAAACGACAAGATAAAGCAGCTGGTGCCAGGAATCAA
genomic: AGCTCGCACGGCCTCACTCTCAAATTCGTCCTCACCACCCACCATCACTGgtatggtacc ... tatgtgacagGGATCATGCTGGTGGAAACGACAAGATAAAGCAGCTGGTGCCAGGAATCAA
EST: gi|254333892|gb|GR848810.1|GR848810
EST:     AGCTCGCACGGCCTCACTCTCAAATTCGTCCTCACCACCCACCATCACTG                         GGATCATGCTGGTGGAAACGACAAGATAAAGCAGCTGGTGCCAGGAATCAA
genomic: AGCTCGCACGGCCTCACTCTCAAATTCGTCCTCACCACCCACCATCACTGgtatggtacc ... tatgtgacagGGATCATGCTGGTGGAAACGACAAGATAAAGCAGCTGGTGCCAGGAATCAA
EST: gi|151411907|gb|EV281718.1|EV281718
EST:     AGCTCGCACGGCCTCACTCTCAAATTCGTCCTCACCACCCACCATCACTG                         GGATCATGCTGGTGGAAACGACAAGATAAAGCAGCTGGTGCCAGGAATCGA
genomic: AGCTCGCACGGCCTCACTCTCAAATTCGTCCTCACCACCCACCATCACTGgtatggtacc ... tatgtgacagGGATCATGCTGGTGGAAACGACAAGATAAAGCAGCTGGTGCCAGGAATCAA
EST: gi|58021215|gb|CX707957.1|CX707957
EST:     CACCACCCACCATCACTG                         GGATCATGNTGGTGGAAACGACAAGATAAAGCAGCTGGTGCCAGGAATCAA
genomic: CACCACCCACCATCACTGgtatggtacc ... tatgtgacagGGATCATGCTGGTGGAAACGACAAGATAAAGCAGCTGGTGCCAGGAATCAA
EST: gi|298171455|gb|HO016487.1|HO016487
EST:     AGCTCGCACGGCCTCACTCTCAAATTCGTCCTCACCACCCACCATCACTG                         GGATCATGCTGGTGGAAACGACAAGATAAAGCAGCTGGTGCCAGGAATCAA
genomic: AGCTCGCACGGCCTCACTCTCAAATTCGTCCTCACCACCCACCATCACTGgtatggtacc ... tatgtgacagGGATCATGCTGGTGGAAACGACAAGATAAAGCAGCTGGTGCCAGGAATCAA
EST: gi|151402755|gb|EV272568.1|EV272568
EST:     AGCTCGCACGGCCTCACTCTCAAATTCGTCCTCACCACCCACCATCACTG                         GGATCATTCTGGTGGAAACGACAAGATAAAGCAGCTGGTGCCAGGAATCAA
genomic: AGCTCGCACGGCCTCACTCTCAAATTCGTCCTCACCACCCACCATCACTGgtatggtacc ... tatgtgacagGGATCATGCTGGTGGAAACGACAAGATAAAGCAGCTGGTGCCAGGAATCAA
EST: gi|298196527|gb|HO041270.1|HO041270
EST:     AGCTCGCACGGCCTCACCCTCAAATTCGTCCTCACCACCCACCATCACTG                         GGATCATGCTGGTGGAAACGACAAGATAAAGCAGCTGGTGCCAGGAATCAA
genomic: AGCTCGCACGGCCTCACTCTCAAATTCGTCCTCACCACCCACCATCACTGgtatggtacc ... tatgtgacagGGATCATGCTGGTGGAAACGACAAGATAAAGCAGCTGGTGCCAGGAATCAA
EST: gi|151406677|gb|EV276492.1|EV276492
EST:     AGCTCGCACGGCCTCACTCTCAAATTCGTCCTCACCACCCACCATCACTG                         GGATCATGCTGGTGGAAACGACAAGATAAAGCAGCTGGTGCCAGGAATCAA
genomic: AGCTCGCACGGCCTCACTCTCAAATTCGTCCTCACCACCCACCATCACTGgtatggtacc ... tatgtgacagGGATCATGCTGGTGGAAACGACAAGATAAAGCAGCTGGTGCCAGGAATCAA
EST: gi|254334579|gb|GR844364.1|GR844364
EST:     AGCTCGCACGGCCTCACTCTCAAATTCGTCCTCACCACCCACCATCACTG                         GGATCATGCTGGTGGAAACGACAAGATAAAGCAGCTGGTGCCAGGAATCAA
genomic: AGCTCGCACGGCCTCACTCTCAAATTCGTCCTCACCACCCACCATCACTGgtatggtacc ... tatgtgacagGGATCATGCTGGTGGAAACGACAAGATAAAGCAGCTGGTGCCAGGAATCAA
EST: gi|254335321|gb|GR846818.1|GR846818
EST:     AGCTCGCACGGCCTCACTCTCAAATTCGTCCTCACCACCCACCATCACTG                         GGATCATGCTGGTGGAAACGACAAGATAAAGCAGCTGGTGCCAGGAATCAA
genomic: AGCTCGCACGGCCTCACTCTCAAATTCGTCCTCACCACCCACCATCACTGgtatggtacc ... tatgtgacagGGATCATGCTGGTGGAAACGACAAGATAAAGCAGCTGGTGCCAGGAATCAA