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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCAAGGAAGGAAGATGTTGGGTGTTATAAGGCACAAGgtactgtctgtgtcattgtctgtgtctgtgtctgtgtctgtgccattgtctgtgtctgattcctattccaattgcatttcatatgatttatttaatttgcag

Basic information

species Glycine max
transcript GLYMA14G36540.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209713861|gb|BW684054.1|BW684054
EST:     ATCAAGGAAGGAAGATGTTGGGTGTTATAAGGCACAAG                         AGTATTCGCCCCGCCTTCTCCGCAATCAGACACTTCTCTTCTGCAGCTAAA
genomic: ATCAAGGAAGGAAGATGTTGGGTGTTATAAGGCACAAGgtactgtctg ... taatttgcagAGTATTCGCCCCGCCTTCTCCGCAATCAGACACTTCTCTTCTGCAGCTAAA
EST: gi|208120661|gb|GD916018.1|GD916018
EST:     ATCAAGGAAGGAAGATGTTGGGTGTTATAAGGCACAAG                         AGTATTCGCCCCGCCTTCTCCGCAATCAGACACTTCTCTTCTGCAGCTAAA
genomic: ATCAAGGAAGGAAGATGTTGGGTGTTATAAGGCACAAGgtactgtctg ... taatttgcagAGTATTCGCCCCGCCTTCTCCGCAATCAGACACTTCTCTTCTGCAGCTAAA
EST: gi|120533350|gb|EH261483.1|EH261483
EST:     ATCAAGGAAGGAAGATGTTGGGTGTTATAAGGCACAAG                         AGTATTCGCCCCGCCTTCTCCGCAATCAGACACTTCTCTTCTGCAGCTAAA
genomic: ATCAAGGAAGGAAGATGTTGGGTGTTATAAGGCACAAGgtactgtctg ... taatttgcagAGTATTCGCCCCGCCTTCTCCGCAATCAGACACTTCTCTTCTGCAGCTAAA
EST: gi|298196446|gb|HO041189.1|HO041189
EST:     ATCAAGGAAGGAAGATGTTGGGTGTTATAAGGCACAAG                         AGTATTCGCCCCGCCTTCTCCGCAATCAGACACTTCTCTTCTGCAGCTAAA
genomic: ATCAAGGAAGGAAGATGTTGGGTGTTATAAGGCACAAGgtactgtctg ... taatttgcagAGTATTCGCCCCGCCTTCTCCGCAATCAGACACTTCTCTTCTGCAGCTAAA
EST: gi|192323797|gb|FK015608.1|FK015608
EST:     ATCAAGGAAGGAAGATGTTGGGTGTTATAAGGCACAAG                         AGTATTCGCCCCGCCTTCTCCGCAATCAGACACTTCTCTTCTGCAGCTAAA
genomic: ATCAAGGAAGGAAGATGTTGGGTGTTATAAGGCACAAGgtactgtctg ... taatttgcagAGTATTCGCCCCGCCTTCTCCGCAATCAGACACTTCTCTTCTGCAGCTAAA
EST: gi|17400857|gb|BM177639.1|BM177639
EST:     ATCAAGGAAGGAAGATGTTGGGTGTTATAAGGCACAAG                         AGTATTCGCCCCGCCTTCTCCGCAATCAGACACTTCTCTTCTGCAGCTAAA
genomic: ATCAAGGAAGGAAGATGTTGGGTGTTATAAGGCACAAGgtactgtctg ... taatttgcagAGTATTCGCCCCGCCTTCTCCGCAATCAGACACTTCTCTTCTGCAGCTAAA
EST: gi|151396530|gb|EV266407.1|EV266407
EST:     ATCAAGGAAGGAAGATGTTGGGTGTTATAAGGCACAAG                         AGTATTCGCCCCGCCTTCTCCGCAATCAGACACTTCTCTTCTGCAGCTAAA
genomic: ATCAAGGAAGGAAGATGTTGGGTGTTATAAGGCACAAGgtactgtctg ... taatttgcagAGTATTCGCCCCGCCTTCTCCGCAATCAGACACTTCTCTTCTGCAGCTAAA
EST: gi|254340298|gb|GR858423.1|GR858423
EST:     ATCAAGGAAGGAAGATGTTGGGTGTTATAAGGCACAAG                         AGTATTCGCCCCGCCTTCTCCGCAATCAGACACTTCTCTTCTGCAGCTAAA
genomic: ATCAAGGAAGGAAGATGTTGGGTGTTATAAGGCACAAGgtactgtctg ... taatttgcagAGTATTCGCCCCGCCTTCTCCGCAATCAGACACTTCTCTTCTGCAGCTAAA
EST: gi|254319588|gb|GR829100.1|GR829100
EST:     AGATCAAGGAAGGAAGATGTTGGGTGTTATAAGGCACAAG                         AGTATTCGCCCCGCCTTCTCCGCAATCAGACACTTCTCTTCTGCAGCTAAA
genomic: AGATCAAGGAAGGAAGATGTTGGGTGTTATAAGGCACAAGgtactgtctg ... taatttgcagAGTATTCGCCCCGCCTTCTCCGCAATCAGACACTTCTCTTCTGCAGCTAAA
EST: gi|16996929|gb|BM086301.1|BM086301
EST:     ATCAAGGAAGGAAGATGTTGGGTGTTATAAGGCACAAG                         AGTATTCGCCCCGCCTTCTCCGCAATCAGACACTTCTCTTCTGCAGCTAAA
genomic: ATCAAGGAAGGAAGATGTTGGGTGTTATAAGGCACAAGgtactgtctg ... taatttgcagAGTATTCGCCCCGCCTTCTCCGCAATCAGACACTTCTCTTCTGCAGCTAAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATCAAGGAAGGAAGATGTTGGGTGTTATAAGGCACAAGgtactgtctgtgtcattgtctgtgtctgtgtctgtgtctgtgccattgtctgtgtctgattcctattccaattgcatttcatatgatttatttaatttgcag

-  AAGGAA
- - -  AAGGAA
- - - -  GGAAGA
- - - - -  AAGATG