Sequence
atgc intronic sequence ATGC exonic sequenceGATTGAGGATGTTTTCACTCGTTACATTAATCTTCCTGATCAAGAAAGAGATAAgtaagctttgaacatgcaacttggtttctcacgtgatattgtggttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatcacattccgggttttaatttgattatttattgtaatttgtttcttgcag
Basic information
species | Glycine max |
transcript | GLYMA14G34160.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA14G34160.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G77980.1 (Arabidopsis thaliana), 5'ss of exon 2
GATTGAGGATGTTTTCACTCGTTACATTAATCTTCCTGATCAAGAAAGAGATAAgtaagctttgaacatgcaactt----ggtttctcacgtgatattgtggttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatcacattccgggttttaatttgattatttattgtaatttgtttcttgcag
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GATTGAAGACGTTTTCTCTAGATACATCAATCTTTCTGATCAAGAACGAGAGAAgtaagctgacctttcaaggctttaatagattctctaaagatattccactcatttgttctta-atatttctctttcattttgttttag--------------------------------------------------------------------------------
upper sequence: GLYMA14G34160.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G77950.2 (Arabidopsis thaliana), 5'ss of exon 2
GATTGAGGATGTTTTCACTCGTTACATTAATCTTCCTGATCAAGAAAGAGATAAgtaagctttgaacatgcaacttggtttctcacgtgatattgtggttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatcacattccgggttttaatttgattatttattgtaatttgtttcttgcag
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GATCGAGGACGTTTTGGCGAGGTACATCAATCTTCCTGATCAAGAAAGAGAAAAgtatgtctataatcatcgcattagtgt---acttggt-ttattaatttctgtatccacatgta-atttatttttgtattttttgataaaatttcag-------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151395786|gb|EV265663.1|EV265663EST: GAGGATGTTTTCACTCGTTACATTAATCTTCCTGATCAAGAAAGAGATAA CGCTGTAGGTTTTCCTGAGCTACCCTATCGCAG
genomic: GAGGATGTTTTCACTCGTTACATTAATCTTCCTGATCAAGAAAGAGATAAgtaagctttg ... tttcttgcagCGCTGTAAGTTTTCCTGAGCTACCCTATCGCAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GATTGAGGATGTTTTCACTCGTTACATTAATCTTCCTGATCAAGAAAGAGATAAgtaagctttgaacatgcaacttggtttctcacgtgatattgtggttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatcacattccgggttttaatttgattatttattgtaatttgtttcttgcag
- - GAGGAT
- - AGGATG
- - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - AAGAGA