1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GATGTGGGAACCACCAGAATCTAACGGGGTGTTACTGTCAAATCACCGACATGAGCAAGAACTACAAGTGGTGTCAGGGGATTGTGCTACTAAAAAGgtatgttttattcatagtgaattttttcagttccattttcacttttttttttaaattatgttctttgattttgaaatctatgtgggtgtttttgaatgtgtcacatgcag
species | Glycine max |
transcript | GLYMA14G33700.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GACATGAGCAAGAACTACAAGTGGTGTCAGGGGATTGTGCTACTAAAAAG CCTGTGCAGGATGAGGATGTAATGAGTAAAGTGTACAAAACCCATGAAGCCEST: gi|193682142|gb|FK622918.1|FK622918
genomic: GACATGAGCAAGAACTACAAGTGGTGTCAGGGGATTGTGCTACTAAAAAGgtatgtttta ... tcacatgcagCCTGTGCAGGATGAGGATGTAATGAGTAAAGTGTACAAAACCCATGAAGCC
EST: GACATGAGCAAGAACTACAAGTGGTGTCAGGGGATTGTGCTACTAAAAAG CCTGTGCAGGATGAGGATGTAATGAGTAAAGTGTACAAAACCCATGAAGCCEST: gi|193665829|gb|FK609690.1|FK609690
genomic: GACATGAGCAAGAACTACAAGTGGTGTCAGGGGATTGTGCTACTAAAAAGgtatgtttta ... tcacatgcagCCTGTGCAGGATGAGGATGTAATGAGTAAAGTGTACAAAACCCATGAAGCC
EST: GACATGAGCAAGAACTACAAGTGGTGTCAGGGGATTGTGCTACTAAAAAG CCTGTGCAGGATGAGGATGTAATGAGTAAAGTGTACAAAACCCATGAAGCC
genomic: GACATGAGCAAGAACTACAAGTGGTGTCAGGGGATTGTGCTACTAAAAAGgtatgtttta ... tcacatgcagCCTGTGCAGGATGAGGATGTAATGAGTAAAGTGTACAAAACCCATGAAGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGTGGGAACCACCAGAATCTAACGGGGTGTTACTGTCAAATCACCGACATGAGCAAGAACTACAAGTGGTGTCAGGGGATTGTGCTACTAAAAAGgtatgttttattcatagtgaattttttcagttccattttcacttttttttttaaattatgttctttgattttgaaatctatgtgggtgtttttgaatgtgtcacatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC