Sequence
atgc intronic sequence ATGC exonic sequenceGGTGTTGATCCTAGTATTAGGGCTGAGGTTTGGCCGTTCCTGCTTGGAGTgtaagctattcatttctagatgatctttactacttttttctttcatacatatgatgtatcctgattacttttaagttcatagttctgcctgatgttttgc...
Basic information
species | Glycine max |
transcript | GLYMA14G25810.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA14G25810.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G122064_T01 (Zea mays), 5'ss of exon 3
GGTGTTGATCCTAGTATTAGGGCTGAGGTTTGGCCGTTCCTGCTTGGAGTgtaagctattcatttctagatgatctttactacttttttctttcatacatatgatgtatcctgattacttttaagttcatagttctgcctga-tgtt-ttgc---
|| |||| || | || |||||||| |||||||| || |||||||||||||||| |||| || |||||| | || ||||| | | | ||| | | | || || | ||| || | |||| |||
GGGATTGAACCGGGCATAAGGGCTGAAGTTTGGCCATTTCTGCTTGGAGTgtaagacg---attttcctattttctttatg--tattaaatttcacatagcaattatattgttacgtagtcaaacttgaagattcgaccaaaatgttcttgtgaa
upper sequence: GLYMA14G25810.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G096622_T01 (Zea mays), 5'ss of exon 3
GGTGTTGATCCTAGTATTAGGGCTGAGGTTTGGCCGTTCCTGCTTGGAGTgtaagctattcatttctagatgatctttactacttttttctttcatacatatgatgtatcctgattactttta--agttcatagttctgcctgatgttttgc-
|| |||| || | || |||||||| |||||||| || |||||||||||||||| | |||| || ||| | ||| | | |||| || | || | || || | || || | | | |
GGAATTGAGCCAGGCATAAGGGCTGAAGTTTGGCCATTTCTGCTTGGAGTgtaagatg---attttcctattttctccatgtatttaatatcacatagcaattaagtgttaacatagtttgaactggtaaatggatgtataaagaaaatcaaa
upper sequence: GLYMA14G25810.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv16s0098g01220.t01 (Vitis vinifera), 5'ss of exon 3
GGTGTTGATCCTAGTATTAGGGCTGAGGTTTGGCCGTTCCTGCTTGGAGTgtaagctattcatttctagatgatctttactacttttttctttcatacatatgatgtatcctgattacttttaagttca-tagttctgcctg-atgttttgc
||||||||||| ||||| || || || ||||||||||||||||| |||||||||| || |||| ||| || || || || || | ||| | | || || | | || | || || | || ||
GGTGTTGATCCAAGTATCAGAGCAGAAGTTTGGCCGTTCCTGCTAGGAGTgtaagtattttgattctcttatatcattgct--cattactttgtatgtttgagatacactttctttttcattggatagaatatctttggatggaccttctgaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|120529837|gb|EH257971.1|EH257971EST: GGTGTTGATCCTAGTATTAGGGCTGAGGTTTGGCCGTTCCTGCTTGGAGT GTATGACTTAGACAGCACCAAAGATGAAAGAGATGTTAAAAGAACTCAAAA
genomic: GGTGTTGATCCTAGTATTAGGGCTGAGGTTTGGCCGTTCCTGCTTGGAGTgtaagctatt ... ttttaaacagGTATGACTTAGACAGCACCAAAGATGAAAGAGATGTTAAAAGAACTCAAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGTGTTGATCCTAGTATTAGGGCTGAGGTTTGGCCGTTCCTGCTTGGAGTgtaagctattcatttctagatgatctttactacttttttctttcatacatatgatgtatcctgattacttttaagttcatagttctgcctgatgttttgc
- - - - - - - - - - - - - - - - - - - - - TTGGAG