Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTTGTTTTCCGGCACAAACTGTACCAGCTGCGTGAAGAGAGGGATATGAAACCAGAGACCTTTGCCAGTTTAGTCTCTGCTCTGCTCTATGAGAAAAGgtaatgcaatttagatataaggaaagaaaaaaactgttctggatttcttttgaaggagtatttgttggaagttttaattttttggcgattttaaaatggg...

Basic information

species Glycine max
transcript GLYMA14G24270.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G24270.3 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G092975_T01 (Zea mays), 5'ss of exon 3
GTCTTGTTTTCCGGCACAAACTGTACCAGCTGCGTGAAGAGAGGGATATGAAACCAGAGACCTTTGCCAGTTTAGTCTCTGCTCTGCTCTATGAGAAAAGgtaatgcaatttagatataaggaaag-aaaaaaactgttctggatttcttttgaaggagtatttgttggaagttttaattttttg-gcgattttaaaatggg--
|  | || ||| ||||||| ||||| |||||||| || |||||||| ||||| || ||||||||||||||  | |||||||| || ||||| ||||| |||| |   ||||| | |||              || |||   ||||      |  ||   |  | | | |  |||||||||||||  ||  |   | |    |  
GGTTGGTGTTCAGGCACAAGCTGTATCAGCTGCGGGAGGAGAGGGACATGAAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgag--aattttgctatcgtacttttggtggaattgtgtaggatactggat--agaccttctgggtagttgttttaattttttatgccctgccagagcatgga

upper sequence: GLYMA14G24270.3 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G045371_T02 (Zea mays), 5'ss of exon 3
GTCTTGTTTTCCGGCACAAACTGTACCAGCTGCGTGAAGAGAGGGATATGAAACCAGAGACCTTTGCCAGTTTAGTCTCTGCTCTGCTCTATGAGAAAAGgtaa------tgcaatttagatataaggaaagaaaaaaactgttctggatttcttttgaaggagtatttgttggaagttttaattttttggcg-attttaaaatggg
|  | || ||| ||||||| ||||| |||||||| || |||||||| ||||| || ||||||||||||||  | |||||||| || ||||| ||||| |||| |      ||| | |  | | |  ||  |       |   |||||| |     |     | ||| |||||     |||||| ||||    |   |   | |    
GGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAGGGACATGAAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgaggattttgctagtgcgcttttgggggaattgtgtaggattctgggtaaacctactgcgggtagttgtta----ttttaaattttgaatgcgctgccagac---

upper sequence: GLYMA14G24270.3 (Glycine max), 5'ss of exon 2
lower sequence: Vv18s0001g02260.t01 (Vitis vinifera), 5'ss of exon 3
GTCTTGTTTTCCGGCACAAACTGTACCAGCTGCGTGAAGAGAGGGATATGAAACCAGAGACCTTTGCCAGTTTAGTCTCTGCTCTGCTCTATGAGAAAAGgtaatgcaatttagatataaggaaagaaaaaaactgttctggatttcttttgaaggagtatttgt--tggaagtttta---attttttggcgattttaaaatggg
| |||||||| |||||||||||||| ||||| || || |||||||||||||| || || |||||||| ||  | || |||||||| || ||||||||||||| |  |  ||     || |   |||        | |  |   ||| || ||   |    ||||   ||||  | |||   |   ||||  | ||||    |  |
GGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAGGGATATGAAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAGgttactcgctt-----attactgaagtttttgtttatcatattttttttctgtttggaattttgaaatggacttattatgcaacatttgctggtttttctttttg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192318541|gb|FK011365.1|FK011365
EST:     AAACCAGAGACCTTTGCCAGTTTAGTCTCTGCTCTGCTCTATGAGAAAAG                         GTTTGGTCCATATTTTTGCCAGCCTGTAATTGCTGGATTAGGGGATGAAGA
genomic: AAACCAGAGACCTTTGCCAGTTTAGTCTCTGCTCTGCTCTATGAGAAAAGgtaatgcaat ... tgcttttcagGTTTGGTCCATATTTTTGCCAGCCTGTAATTGCTGGATTAGGGGATGAAGA
EST: gi|151405517|gb|EV275331.1|EV275331
EST:     AAACCAGAGACCTTTGCCAGTTTAGTCTCTGCTCTGCTCTATGAGAAAAG                         GTTTGGTCCATATTTTTGCCAGCCTGTAATTGCTGGATTAGGGGATGAAGA
genomic: AAACCAGAGACCTTTGCCAGTTTAGTCTCTGCTCTGCTCTATGAGAAAAGgtaatgcaat ... tgcttttcagGTTTGGTCCATATTTTTGCCAGCCTGTAATTGCTGGATTAGGGGATGAAGA
EST: gi|6914510|gb|AW396040.1|AW396040
EST:     AAACCAGAGACCTTTGCCAGTTTAGTCTCTGCTCTGCTCTATGAGAAAAG                         GTTTGGTCCATATTTTTGCCAGCCTGTAATTGCTGGATTAGGGGATGAAGA
genomic: AAACCAGAGACCTTTGCCAGTTTAGTCTCTGCTCTGCTCTATGAGAAAAGgtaatgcaat ... tgcttttcagGTTTGGTCCATATTTTTGCCAGCCTGTAATTGCTGGATTAGGGGATGAAGA
EST: gi|37995705|gb|CF807294.1|CF807294
EST:     AAACCAGAGACCTTTGCCAGTTTAGTCTCTGCTCTGCTCTATGAGAAAAG                         GTTTGGTCCATATTTTTGCCAGCCTGTAATTGCTGGATTAGGGGATGAAGA
genomic: AAACCAGAGACCTTTGCCAGTTTAGTCTCTGCTCTGCTCTATGAGAAAAGgtaatgcaat ... tgcttttcagGTTTGGTCCATATTTTTGCCAGCCTGTAATTGCTGGATTAGGGGATGAAGA
EST: gi|10233865|gb|BE802753.1|BE802753
EST:     AAACCAGAGACCTTTGCCAGTTTAGTCTCTGCTCTGCTCTATGAGAAAAG                         GTTTGGTCCATATTTTTGCCAGCCTGTAATTGCTGGATTACGGGATGAAGA
genomic: AAACCAGAGACCTTTGCCAGTTTAGTCTCTGCTCTGCTCTATGAGAAAAGgtaatgcaat ... tgcttttcagGTTTGGTCCATATTTTTGCCAGCCTGTAATTGCTGGATTAGGGGATGAAGA
EST: gi|192331116|gb|FK020336.1|FK020336
EST:     AAACCAGAGACCTTTGCCAGTTTAGTCTCTGCTCTGCTCTATGAGAAAAG                         GTTTGGTCCATATTTTTGCCAGCCTGTAATTGCTGGATTAGGGGATGAAGA
genomic: AAACCAGAGACCTTTGCCAGTTTAGTCTCTGCTCTGCTCTATGAGAAAAGgtaatgcaat ... tgcttttcagGTTTGGTCCATATTTTTGCCAGCCTGTAATTGCTGGATTAGGGGATGAAGA
EST: gi|19346754|gb|BM891634.1|BM891634
EST:     AAACCAGAGACCTTTGCCAGTTTAGTCTCTGCTCTGCTCTATGAGAAAAG                         GTTTGGTCCATATTTTTGCCAGCCTGTAATTGCTGGATTAGGGGATGAAGA
genomic: AAACCAGAGACCTTTGCCAGTTTAGTCTCTGCTCTGCTCTATGAGAAAAGgtaatgcaat ... tgcttttcagGTTTGGTCCATATTTTTGCCAGCCTGTAATTGCTGGATTAGGGGATGAAGA
EST: gi|9819697|gb|BE555210.1|BE555210
EST:     CTCTGCTCTGCTCTATGAGAAAAG                         GTTTGGTCCATATTTTTGCCAGCCTGTAATTGCTGGATTAGGGGATGAAGA
genomic: CTCTGCTCTGCTCTATGAGAAAAGgtaatgcaat ... tgcttttcagGTTTGGTCCATATTTTTGCCAGCCTGTAATTGCTGGATTAGGGGATGAAGA
EST: gi|298182182|gb|HO026357.1|HO026357
EST:     AAACCAGAGACCTTTGCCAGTTTAGTCTCTGCTCTGCTCTATGAGAAAAG                         GTTTGGTCCATATTTTTGCCAGCCTGTAATTGCTGGATTAGGGGATGAAGA
genomic: AAACCAGAGACCTTTGCCAGTTTAGTCTCTGCTCTGCTCTATGAGAAAAGgtaatgcaat ... tgcttttcagGTTTGGTCCATATTTTTGCCAGCCTGTAATTGCTGGATTAGGGGATGAAGA
EST: gi|298176982|gb|HO023343.1|HO023343
EST:     AAACCAGAGACCTTTGCCAGTTTAGTCTCTGCTCTGCTCTATGAGAAAAG                         GTTTGGTCCATATTTTTGCCAGCCTGTAATTGCTGGATTAGGGGATGAAGA
genomic: AAACCAGAGACCTTTGCCAGTTTAGTCTCTGCTCTGCTCTATGAGAAAAGgtaatgcaat ... tgcttttcagGTTTGGTCCATATTTTTGCCAGCCTGTAATTGCTGGATTAGGGGATGAAGA
EST: gi|298191795|gb|HO035877.1|HO035877
EST:     AAACCAGAGACCTTTGCCAGTTTAGTCTCTGCTCTGCTCTATGAGAAAAG                         GTTTGGTCCATATTTTTGCCAGCCTGTAATTGCTGGATTAGGGGATGAAGA
genomic: AAACCAGAGACCTTTGCCAGTTTAGTCTCTGCTCTGCTCTATGAGAAAAGgtaatgcaat ... tgcttttcagGTTTGGTCCATATTTTTGCCAGCCTGTAATTGCTGGATTAGGGGATGAAGA
EST: gi|151410578|gb|EV280393.1|EV280393
EST:     AAACCAGAGACCTTTGCCAGTTTAGTCTCTGCTCTGCTCTATGAGAAAAG                         GTTTGGTCCATATTTTTGCCAGCCTGTAATTGCTGGATTAGGGGATGAAGA
genomic: AAACCAGAGACCTTTGCCAGTTTAGTCTCTGCTCTGCTCTATGAGAAAAGgtaatgcaat ... tgcttttcagGTTTGGTCCATATTTTTGCCAGCCTGTAATTGCTGGATTAGGGGATGAAGA
EST: gi|207769518|gb|GD742112.1|GD742112
EST:     AAACCAGAGACCTTTGCCAGTTTAGTCTCTGCTCTGCTCTATGAGAAAAG                         GTTTGGTCCATATTTTTGCCAGCCTGTAATTGCTGGATTAGGGGATGAAGA
genomic: AAACCAGAGACCTTTGCCAGTTTAGTCTCTGCTCTGCTCTATGAGAAAAGgtaatgcaat ... tgcttttcagGTTTGGTCCATATTTTTGCCAGCCTGTAATTGCTGGATTAGGGGATGAAGA
EST: gi|298198899|gb|HO042262.1|HO042262
EST:     AAACCAGAGACCTTTGCCAGTTTAGTCTCTGCTCTGCTCTATGAGAAAAG                         GTTTGGTCCATATTTTTGCCAGCCTGTAATTGCTGGATTAGGGGATGAAGA
genomic: AAACCAGAGACCTTTGCCAGTTTAGTCTCTGCTCTGCTCTATGAGAAAAGgtaatgcaat ... tgcttttcagGTTTGGTCCATATTTTTGCCAGCCTGTAATTGCTGGATTAGGGGATGAAGA
EST: gi|12774129|gb|BG239056.1|BG239056
EST:     AAACCAGAGACCTTTGCCAGTTTAGTCTCTGCTCTGCTCTATGAGAAAAG                         GTTTGGTCCATATTTTTGCCAGCCTGTAATTGCTGGATTAGGGGATGAAGA
genomic: AAACCAGAGACCTTTGCCAGTTTAGTCTCTGCTCTGCTCTATGAGAAAAGgtaatgcaat ... tgcttttcagGTTTGGTCCATATTTTTGCCAGCCTGTAATTGCTGGATTAGGGGATGAAGA
EST: gi|16347157|gb|BI972752.1|BI972752
EST:     AACCAGAGACCTTTGCCAGTTTAGTCTCTGCTCTGCCTCTATGACAAAAG                         GTTTGGGCCATATTTTTGCCCGCCTGTAATTGCTGGATTAGGGGATGAAGA
genomic: AACCAGAGACCTTTGCCAGTTTAGTCTCTGCTCTGC-TCTATGAGAAAAGgtaatgcaat ... tgcttttcagGTTTGGTCCATATTTTTGCCAGCCTGTAATTGCTGGATTAGGGGATGAAGA
EST: gi|23726885|gb|BU761446.1|BU761446
EST:     AAACCAGAGACCTTTGCCAGTTTAGTCTCTGCTCTGCTCTATGAGAAAAG                         GTTTGGTCCATATTTTTGCCAGCCTGTAATTGCTGGATTAGGGGATGAAGA
genomic: AAACCAGAGACCTTTGCCAGTTTAGTCTCTGCTCTGCTCTATGAGAAAAGgtaatgcaat ... tgcttttcagGTTTGGTCCATATTTTTGCCAGCCTGTAATTGCTGGATTAGGGGATGAAGA
EST: gi|17519828|gb|BM188870.1|BM188870
EST:     AAACCAGAGACCTTTGCCAGTTTAGTCTTTTCTCTGCTCTATGAGAAAAG                         GTTTGGTCCATATTTTTGCCAGCCTGTAATTGCTGGATTAGGGGATGAAGA
genomic: AAACCAGAGACCTTTGCCAGTTTAGTCTCTGCTCTGCTCTATGAGAAAAGgtaatgcaat ... tgcttttcagGTTTGGTCCATATTTTTGCCAGCCTGTAATTGCTGGATTAGGGGATGAAGA
EST: gi|26059647|gb|CA802561.1|CA802561
EST:     AAACCAGAGACCTTTGCCAGTTTAGTCTCTGCTCTGCTCTATGAGAAAAG                         GTTTGGTCCATATTTTTGCCAGCCTGTAATTGCTGGATTAGGGGATGAAGA
genomic: AAACCAGAGACCTTTGCCAGTTTAGTCTCTGCTCTGCTCTATGAGAAAAGgtaatgcaat ... tgcttttcagGTTTGGTCCATATTTTTGCCAGCCTGTAATTGCTGGATTAGGGGATGAAGA
EST: gi|4395893|gb|AI494890.1|AI494890
EST:     AAACCAGAGACCTTTGCCAGTTTAGTCTCTGCTCTGCTCTATGAGAAAAG                         GTTTGGTCCATATTTTTGCCAGCCTGTAATTGCTGGATTAGGGGATGAAGA
genomic: AAACCAGAGACCTTTGCCAGTTTAGTCTCTGCTCTGCTCTATGAGAAAAGgtaatgcaat ... tgcttttcagGTTTGGTCCATATTTTTGCCAGCCTGTAATTGCTGGATTAGGGGATGAAGA
EST: gi|7233908|gb|AW569250.1|AW569250
EST:     AACCAGAGACCTTTGCCAGTTTAGTCTCTGCTCTGCTCTATGAGAAAAG                         GTTTGGTCCATATTTTTGCCAGCCTGTAATTGCTGGATTAGGGGATGAAGA
genomic: AACCAGAGACCTTTGCCAGTTTAGTCTCTGCTCTGCTCTATGAGAAAAGgtaatgcaat ... tgcttttcagGTTTGGTCCATATTTTTGCCAGCCTGTAATTGCTGGATTAGGGGATGAAGA
EST: gi|298191024|gb|HO038503.1|HO038503
EST:     AAACCAGAGACCTTTGCCAGTTTAGTCTCTGCTCTGCTCTATGAGAAAAG                         GTTTGGTCCATATTTTTGCCAGCCTGTAATTGCTGGATTAGGGGATGAAGA
genomic: AAACCAGAGACCTTTGCCAGTTTAGTCTCTGCTCTGCTCTATGAGAAAAGgtaatgcaat ... tgcttttcagGTTTGGTCCATATTTTTGCCAGCCTGTAATTGCTGGATTAGGGGATGAAGA
EST: gi|7926292|gb|AW832318.1|AW832318
EST:     AAACCAGAGACCTTTGCCAGTTTAGTCTCTGCTCTGCTCTATGAGAAAAG                         GTTTGGTCCATATTTTTGCCAGCCTGTAATTGCTGGATTAGGGGATGAAGA
genomic: AAACCAGAGACCTTTGCCAGTTTAGTCTCTGCTCTGCTCTATGAGAAAAGgtaatgcaat ... tgcttttcagGTTTGGTCCATATTTTTGCCAGCCTGTAATTGCTGGATTAGGGGATGAAGA
EST: gi|16348147|gb|BI973742.1|BI973742
EST:     AAACCAGAGACCTTTGCCAGTTTAGTCTCTGCTCTGCTCTATGAGAAAAG                         GTTTGGTCCATATTTTTGCCAGCCTGTAATTGCTGGATTAGGGGATGAAGA
genomic: AAACCAGAGACCTTTGCCAGTTTAGTCTCTGCTCTGCTCTATGAGAAAAGgtaatgcaat ... tgcttttcagGTTTGGTCCATATTTTTGCCAGCCTGTAATTGCTGGATTAGGGGATGAAGA
EST: gi|298177393|gb|HO027174.1|HO027174
EST:     AAACCAGAGACCTTTGCCAGTTTAGTCTCTGCTCTGCTCTATGAGAAAAG                         GTTTGGTCCATATTTTTGCCAGCCTGTAATTGCTGGATTAGGGGATGAAGA
genomic: AAACCAGAGACCTTTGCCAGTTTAGTCTCTGCTCTGCTCTATGAGAAAAGgtaatgcaat ... tgcttttcagGTTTGGTCCATATTTTTGCCAGCCTGTAATTGCTGGATTAGGGGATGAAGA