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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAATTGAAATGCTCTCTCTTGGGTCTTTCAAGACTGGTGCTATTCTCTTGgtaagtatttttttttctttaattatggttatggtgcttaaagcctttttgttttaactttacgatagagcgacaatttttctctcattaccccaatgaa...

Basic information

species Glycine max
transcript GLYMA14G21190.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G21190.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os02g02530.3 (Oryza sativa), 5'ss of exon 6
GGAATTGAAATGCTCTCTCTTGGGTCTTTCAAGACTGGTGCTATTCTCTTGgtaagtatttttttttctttaattatggttatggtgctt----aaagcctttttgttttaactttacgatagagcgac--aatttttctctcattaccccaatgaa
|||||||| ||||| || ||||| || ||||| ||||||||||||||||||||| |   | ||| | ||  | | |   ||||  |   |     ||  ||| ||  |||   || || ||    | |   ||    |  || | ||   ||     
GGAATTGAGATGCTATCACTTGGATCATTCAAAACTGGTGCTATTCTCTTGgtatgggctgtttgtactgaactgaaacttatattttctggcagaaatcttattactttt-tttcaccattcttccattaaagccattacttagtagagca-----

upper sequence: GLYMA14G21190.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os05g36070.2 (Oryza sativa), 5'ss of exon 7
GGAATTGAAATGCTCTCTCTTGGGTCTTTCAAGACTGGTGCTATTCTCTTGgtaagtatttttttttctttaattatggttatggtgcttaaagcctttttgtttta--actttacgatagagcgacaatttttctc-tcattaccccaatgaa
||||| || ||||| || ||||| || ||||| ||||||||||||||||||||| | ||| ||| |  |  | | |   ||||  |   |   |  |  ||||   |  || ||    ||   |  | ||     || | | ||    |     
GGAATCGAGATGCTATCACTTGGATCATTCAAAACTGGTGCTATTCTCTTGgtatggattgtttgtattgaactgaaacttatattttctggtgg-tacttgtcaaagcaccttttattatttcagccatcaaaatcattactagttgagca--

upper sequence: GLYMA14G21190.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv06s0009g03520.t01 (Vitis vinifera), 5'ss of exon 7
GGAATTGAAATGCTCTCTCTTGGGTCTTTCAAGACTGGTGCTATTCTCTTGgtaagtatttttttttctt--taattatggttatggtgcttaaagcctttttgttttaactttacgatagag-cgacaatttttctctcattaccccaatgaa
|| |||||||||||||| ||||||||||| || |||||||| || || |||||||| |  ||    |     |   | |     | ||     || |  || |   ||||   | | ||  |  | ||||| ||| |           | |   
GGTATTGAAATGCTCTCACTTGGGTCTTTTAAAACTGGTGCCATCCTTTTGgtaagaaccttaaactagagatggctttatcagtagttgcagaatctgttcttgattaatcatgccatttattccacaatgtttgttcttggtgtatact---

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192334327|gb|FK025532.1|FK025532
EST:     GGATTGAAATGCTCTCTCTTGGGTCTTTCAAGACTGGTGCTATTCTCTTG                         GCTGGACTCTTTGTTTATGACATTTTCTGGGTTTTCTTCACTCCAGTGATG
genomic: GAATTGAAATGCTCTCTCTTGGGTCTTTCAAGACTGGTGCTATTCTCTTGgtaagtattt ... tgttttgcagGCTGGACTCTTTGTTTATGACATTTTCTGGGTTTTCTTCACTCCAGTGATG
EST: gi|208136700|gb|GD939674.1|GD939674
EST:     GAATTGAAATGCTCTCTCTTGGGTCTTTCAAGACTGGTGCTATTCTCTTG                         GCTGGACTCTTTGTTTATGACATTTTCTGGGTTTTCTTCACTCCAGTGATG
genomic: GAATTGAAATGCTCTCTCTTGGGTCTTTCAAGACTGGTGCTATTCTCTTGgtaagtattt ... tgttttgcagGCTGGACTCTTTGTTTATGACATTTTCTGGGTTTTCTTCACTCCAGTGATG