1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GTTATGGCAAGACGCAGAGAATCGCAATTTACTCGCTAGTCTTCTGAAAAAGAATTCAGCTCAGgtttttcttttttaattttgctcttatattattgtaattcatttttagtctgcaaacttatattattgtctttttatgttttattttgttactag
species | Glycine max |
transcript | GLYMA14G14000.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CAGAGAATCGCAATTTACTCGCTAGTCTTCTGAAAAAGAATTCAGCTCAG AGGCCTAAGGTTCTTACAGTGGAAGATAAGTTAATGGTGCTTGGGTGCAGEST: gi|7232441|gb|AW567797.1|AW567797
genomic: CAGAGAATCGCAATTTACTCGCTAGTCTTCTGAAAAAGAATTCAGCTCAGgtttttcttt ... ttgttactagAGGCCTAAGGTTCTTACAGTGGAAGATAAGTTAATGGTGCTTGGGTGCAG
EST: CAGAGAATCGCAATTTACTCGCTAGTCTTCTGAAAAAGAATTCAGCTCAG AGGCCTAAGGTTCTTACAGTGGAAGATAAGTTAATGGTGCTTGGGTGCAGEST: gi|120532999|gb|EH261132.1|EH261132
genomic: CAGAGAATCGCAATTTACTCGCTAGTCTTCTGAAAAAGAATTCAGCTCAGgtttttcttt ... ttgttactagAGGCCTAAGGTTCTTACAGTGGAAGATAAGTTAATGGTGCTTGGGTGCAG
EST: CAGAGAATCGCAATTTACTCGCTAGTCTTCTGAAAAAGAATTCAGCTCAG AGGCCTAAGGTTCTTACAGTGGAAGATAAGTTAATGGTGCTTGGGTGCAGEST: gi|120533853|gb|EH261986.1|EH261986
genomic: CAGAGAATCGCAATTTACTCGCTAGTCTTCTGAAAAAGAATTCAGCTCAGgtttttcttt ... ttgttactagAGGCCTAAGGTTCTTACAGTGGAAGATAAGTTAATGGTGCTTGGGTGCAG
EST: CAGAGAATCGCAATTTACTCGCTAGTCTTCTGAAAAAGAATTCAGCTCAG AGGCCTAAGGTTCTTACAGTGGAAGATAAGTTAATGGTGCTTGGGTGCAGEST: gi|26056275|gb|CA799189.1|CA799189
genomic: CAGAGAATCGCAATTTACTCGCTAGTCTTCTGAAAAAGAATTCAGCTCAGgtttttcttt ... ttgttactagAGGCCTAAGGTTCTTACAGTGGAAGATAAGTTAATGGTGCTTGGGTGCAG
EST: CAGAGAATCGCAATTTACTCGCTAGTCTTCTGAAAAAGAATTCAGCTCAG AGGCCTAAGGTTCTTACAGTGGAAGATAAGTTAATGGTGCTTGGGTGCAG
genomic: CAGAGAATCGCAATTTACTCGCTAGTCTTCTGAAAAAGAATTCAGCTCAGgtttttcttt ... ttgttactagAGGCCTAAGGTTCTTACAGTGGAAGATAAGTTAATGGTGCTTGGGTGCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTATGGCAAGACGCAGAGAATCGCAATTTACTCGCTAGTCTTCTGAAAAAGAATTCAGCTCAGgtttttcttttttaattttgctcttatattattgtaattcatttttagtctgcaaacttatattattgtctttttatgttttattttgttactag
- - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA