Sequence
atgc intronic sequence ATGC exonic sequenceTGTTCCTTCAAAGAACAATTGCAGCAGCATGTCCGGGTCCATGCAATGGAAGCAGTAATGGCTTGTTGGGATATAGAGCAATCATTGCAGAGTCTAACAGgtgcataaaagtgtcttcttttagtaattgtctcatcttaaaataaatgtgaagatttgttgcgtgattgaatgaaaaattgaaaataggatgtttcaca...
Basic information
species | Glycine max |
transcript | GLYMA14G13750.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA14G13750.2 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os06g43860.2 (Oryza sativa), 5'ss of exon 2
TGTTCCTTCAAAGAACAATTGCAGCAGCATGTCCGGGTCCATGCAATGGAAGCAGTAATGGCTTGTTGGGATATAGAGCAATCATTGCAGAGTCTAACAGgt-gcataaaagtgtcttcttttagtaattgtctcatcttaaaataaatgtgaagatttgttgcgtgattgaatgaaaaattgaaaataggatgtttcaca--------
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TGTTCGTTCAAGGAACAACTACAGCAACATGTGCGTGTTCATGCAATGGAAGCAGTAATGGCTTGCTGGGAACTTGAACAAACTTTACAGAGCCTTACAGgtagcacaaaaaaatctagtt---gatattattcaacatgagaata---gtggactcctgattttag---gaagagaaacttaaagttattatttctctctgtttaatt
upper sequence: GLYMA14G13750.2 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os08g19650.1 (Oryza sativa), 5'ss of exon 2
TGTTCCTTCAAAGAACAATTGCAGCAGCATGTCCGGGTCCATGCAATGGAAGCAGTAATGGCTTGTTGGGATATAGAGCAATCATTGCAGAGTCTAACAGgtgcataaaagtgtcttcttttagtaattgtctcatcttaaaataaatgtgaagatttgttgcgtgattgaatgaaaa-----attgaaaataggatgtttcaca
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TGTTCGTTTAAAGAGCAGCTACAGCAGCATGTCCGTGTTCATGCTATGGAAGCAGTAATGGCATGCTGGGAACTTGAACAAAACCTTCAGAGTTTGACAGgtacaacctttttgttatctctttcaattttcataatttacaa-aagta-aaacttttattaggaaaaaaaatccaaacttttcttggtaatgcaatgatag---
upper sequence: GLYMA14G13750.2 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os02g08544.2 (Oryza sativa), 5'ss of exon 2
TGTTCCTTCAAAGAACAATTGCAGCAGCATGTCCGGGTCCATGCAATGGAAGCAGTAATGGCTTGTTGGGATATAGAGCAATCATTGCAGAGTCTAACAGgtgcataaaagtgtcttcttttagtaattgtctcatctta----aaataaatgtgaagatttgttgcgtgattgaatgaaaaattgaaaataggatgtttcaca
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TGCTCATTCAAGGAACAACTTCAGCAGCATGTGCGTGTTCATGCAATGGAAGCAGTGATGGGGTGCTGGGAACTTGAACAGTCTTTACAAAGTCTAACAGgtagaccaaagcttctatctgcttgaatcagttcagcaaatggtagaaaatttcaaacatacactttttttttgt-tatttcattgataatattcaggcaa---
upper sequence: GLYMA14G13750.2 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G055243_T01 (Zea mays), 5'ss of exon 2
TGTTCCTTCAAAGAACAATTGCAGCAGCATGTCCGGGTCCATGCAATGGAAGCAGTAATGGCTTGTTGGGATATAGAGCAATCATTGCAGAGTCTAACAGgtgcataaaagtgtcttctttta-gtaattgtctcatcttaaaataaatgtgaagatttgttgcgtgattgaatgaaaaattgaaaataggatgtttcaca-
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TGTTCATTCAAGGAACAACTCCAGCAGCATGTGCGTGTTCATGCAATGGAAGCAGTCATGGCTTGTTGGGAGCTCGAACAAACTTTACAAAGCCTTACAGgtagctgaagctttctactttaatatttttagaggaaaatgctttagctgcccctttttggagtctgcttgatgtacaagt--acaactccctacttaatat
upper sequence: GLYMA14G13750.2 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G433591_T02 (Zea mays), 5'ss of exon 3
TGTTCCTTCAAAGAACAATTGCAGCAGCATGTCCGGGTCCATGCAATGGAAGCAGTAATGGCTTGTTGGGATATAGAGCAATCATTGCAGAGTCTAACAGgtgcataaaagtgtcttcttttagtaattgtctcatcttaaaataaatgtgaagatttgttgcgtg-attgaatgaaaa-attgaaaataggatgtttcaca---
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TGCTCATTCAAGGAACAGCTGCAGCAGCATGTACGTGTTCATGCAATGGAAGCAGTGATGGGTTGCTGGGAGCTTGAACAATCCTTACAAAGCCTAACAGgtggat-----tgttttttttaaatctcgcgttaattcagaaacttggctgaagctttcatatatacactacttgcttttatcatcatttcaataattgtagcat
upper sequence: GLYMA14G13750.2 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G370332_T01 (Zea mays), 5'ss of exon 2
TGTTCCTTCAAAGAACAATTGCAGCAGCATGTCCGGGTCCATGCAATGGAAGCAGTAATGGCTTGTTGGGATATAGAGCAATCATTGCAGAGTCTAACAGgtgcataaaagtgtcttcttttagtaattgtctcatcttaaaataaatgtgaagatttgttgcgtgattgaatgaaaaattgaaaataggatgtttcaca--
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TGCTCATTCAAGGAACAACTCCAGCAGCATGTACGTGTTCATGCAATGGAAGCAGTGATGGGTTGCTGGGAGCTTGAACAATCTTTACAAAGCCTAACAGgtagattgt--tttctttttttaatcttgtgttaattcagaaacgtgcctgaagctttcagatatacatcacttgcttttatcatttcaataattgcagcctMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|13480317|gb|BG509660.1|BG509660EST: AGCAGTAATGGCTTGTTGGGATATAGAGCAATCATTGCAGAGTCTAACAG GAGTTTCACCTGGAGAAGGTACAGGGGCAACAATGTCTGATGATGAAGATG
genomic: AGCAGTAATGGCTTGTTGGGATATAGAGCAATCATTGCAGAGTCTAACAGgtgcataaaa ... tgataaacagGAGTTTCACCTGGAGAAGGTACAGGGGCAACAATGTCTGATGATGAAGATG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGTTCCTTCAAAGAACAATTGCAGCAGCATGTCCGGGTCCATGCAATGGAAGCAGTAATGGCTTGTTGGGATATAGAGCAATCATTGCAGAGTCTAACAGgtgcataaaagtgtcttcttttagtaattgtctcatcttaaaataaatgtgaagatttgttgcgtgattgaatgaaaaattgaaaataggatgtttcaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA