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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAACTTGGAATCGACGAGGTCGTCTACACCGTTGATCTCAGGAAAGGAGAGGTCACTAAAGgttagctttgccttttcacttttcaattcttttcttcttttttgtttaatttgttcttagttcttaaatgtaaaattgccatcgaagacacgcatctcag...

Basic information

species Glycine max
transcript GLYMA14G09100.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298180955|gb|HO022394.1|HO022394
EST:     CGACGAGGTCGTCTACACCGTTGATCTCAGGAAAGGAGAGGTCACTAAAG                         GGCCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCATTTAAGGACGAGG
genomic: CGACGAGGTCGTCTACACCGTTGATCTCAGGAAAGGAGAGGTCACTAAAGgttagctttg ... atgtatttagGGCCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCATTTAAGGACGAGG
EST: gi|151408508|gb|EV278316.1|EV278316
EST:     CGACGAGGTCGTCTACACCGTTGATCTCAGGAAAGGAGAGGTCACTAAAG                         GGCCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCATTTAAGGACGAGG
genomic: CGACGAGGTCGTCTACACCGTTGATCTCAGGAAAGGAGAGGTCACTAAAGgttagctttg ... atgtatttagGGCCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCATTTAAGGACGAGG
EST: gi|151398541|gb|EV268412.1|EV268412
EST:     CGACGAGGTCGTCTACACCGTTGATCTCAGGAAAGGAGAGGTCACTAAAG                         GGCCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCATTTAAGGACGAGG
genomic: CGACGAGGTCGTCTACACCGTTGATCTCAGGAAAGGAGAGGTCACTAAAGgttagctttg ... atgtatttagGGCCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCATTTAAGGACGAGG
EST: gi|37995730|gb|CF807319.1|CF807319
EST:     CGACGAGGTCGTCTACACCGTTGATCTCAGGAAAGGAGAGGTCACCAAAG                         GGCCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCATTTAAGGACGAGG
genomic: CGACGAGGTCGTCTACACCGTTGATCTCAGGAAAGGAGAGGTCACTAAAGgttagctttg ... atgtatttagGGCCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCATTTAAGGACGAGG
EST: gi|21255711|gb|BQ452599.1|BQ452599
EST:     CGACGAGGTCGTCTACACCGTTGATCTCAGGAAAGGATAGGTCACTAAAG                         GGCCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCATTTAAGGACGAGG
genomic: CGACGAGGTCGTCTACACCGTTGATCTCAGGAAAGGAGAGGTCACTAAAGgttagctttg ... atgtatttagGGCCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCATTTAAGGACGAGG
EST: gi|21888088|gb|BQ741301.1|BQ741301
EST:     CGACGAGGTCGTCTACACCGTTGATCTCAGGAAAGGAGAGGTCACTAAAG                         GGCCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCATTTAAGGACGAGG
genomic: CGACGAGGTCGTCTACACCGTTGATCTCAGGAAAGGAGAGGTCACTAAAGgttagctttg ... atgtatttagGGCCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCATTTAAGGACGAGG
EST: gi|18726659|gb|BM523715.1|BM523715
EST:     GGAAAGGAGAGGTCACTAAAG                         GGCCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCATTTAAGGACGAGG
genomic: GGAAAGGAGAGGTCACTAAAGgttagctttg ... atgtatttagGGCCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCATTTAAGGACGAGG
EST: gi|16349133|gb|BI974728.1|BI974728
EST:     CGACGAGGTCGTCTACACCGTTGATCTCAGGAAAGGAGAGGTCACTAAAG                         GGCCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCATTTAAGGACGAGG
genomic: CGACGAGGTCGTCTACACCGTTGATCTCAGGAAAGGAGAGGTCACTAAAGgttagctttg ... atgtatttagGGCCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCATTTAAGGACGAGG
EST: gi|254348692|gb|GR852371.1|GR852371
EST:     CGACGAGGTCGTCTACACCGTTGATCTCAGGAAAGGAGAGGTCACTAAAG                         GGCCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCATTTAAGGACGAGG
genomic: CGACGAGGTCGTCTACACCGTTGATCTCAGGAAAGGAGAGGTCACTAAAGgttagctttg ... atgtatttagGGCCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCATTTAAGGACGAGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAACTTGGAATCGACGAGGTCGTCTACACCGTTGATCTCAGGAAAGGAGAGGTCACTAAAGgttagctttgccttttcacttttcaattcttttcttcttttttgtttaatttgttcttagttcttaaatgtaaaattgccatcgaagacacgcatctcag

- - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - GAGAGG