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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGTATGAATGACAGAGGAGTGTCCTACACCTTTGGCCCTGATATGGTCGCTGAATTCTTGACAAAGCATGACTTGGACCTTGTTTGTCGTGCTCACCAGgtcactgtttttttttacaatactcattcagtttctataataaaaaggttaagcgtacgatgctttactggacactgacattataaattttatgtag

Basic information

species Glycine max
transcript GLYMA14G07080.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G07080.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv13s0019g02410.t01 (Vitis vinifera), 5'ss of exon 2
GGGTATGAATGACAGAGGAGTGTCCTACACCTTTGGCCCTGATATGGTCGCTGAATTCTTGACAAAGCATGACTTGGACCTTGTTTGTCGTGCTCACCAGgtcactgtttttttttacaatactcattcagtttctataataaaaaggttaagcg-tacgatgctttactggacactgacattataaattttatgtag
||| |||||||||||||| || || |  |||||||| |||||||  ||  | |||||||||||||| ||||| || ||||||||||||||||| || ||||| | ||   |||||   | |  ||  |    ||||||  ||   | | | |    |   || |||   | |     |                    
GGGGATGAATGACAGAGGTGTCTCATTTACCTTTGGGCCTGATAAAGTGTCAGAATTCTTGACAAAACATGATTTAGACCTTGTTTGTCGTGCCCATCAGgttattggcattttt---agttttctcttg--ttctattttactcatgctgaaaactgaaattcttcttttggtctag--------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10845436|gb|BF068555.1|BF068555
EST:     GAATTCTTGACAAAGCATGACTTGGACCTTGTTTGTCGTGCTCACCAG                         GTTGTAGAGGATGGGTATGAATTCTTTGCTGATAGGAAACTTGTTACGATA
genomic: GAATTCTTGACAAAGCATGACTTGGACCTTGTTTGTCGTGCTCACCAGgtcactgttt ... ttttatgtagGTTGTAGAGGATGGGTATGAATTCTTTGCTGATAGGAAACTTGTTACGATA