Sequence
atgc intronic sequence ATGC exonic sequenceAATGGCCATGTTGGATTTATGTTATCATGCTATGATGCTGAGCTTAGCTATGATCCTCACAATGACACCTTCCAGGCCAGgtaatttaattggacatgattcttggtgattatatgtatgttcccatcagtcattgaaagaagaaatattaaaaattaactcaacccattttcattatat...
Basic information
species | Glycine max |
transcript | GLYMA14G04080.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA14G04080.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os01g17390.1 (Oryza sativa), 5'ss of exon 2
AATGGCCATGTTGGATTTATGTTATCATGCTATGATGCTGAGCTTAGCTATGATCCTCACAATGACACCTTCCAGGCCAGgtaat-----ttaattggac--atgattcttg--gtgattatatgtatgttcccatca-gtcat--tgaaagaagaaatattaaaaattaactcaacccattttcattatat------------------------------------------------
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CATGGGCATGTTGGATTCATGATGTCATGCTACGATGCAGAGCTCAGCTATGATTTCCACAGTGATACCTTCCGTGCAAGgtactaacttcttactggtttagtgattttagctgtggttgaatgtaaattgtggttatgtcctgatgattttgaggcgaacacatagcagcacaaagattttatatcctctgaagattgtatcttcaagttatctaactggccttaaaaacattgacag
upper sequence: GLYMA14G04080.1 (Glycine max), 5'ss of exon 2
lower sequence: AT2G26850.1 (Arabidopsis thaliana), 5'ss of exon 2
AATGGCCATGTTGGATTTATGTTATCATGCTATGATGCTGAGCTTAGCTATGATCCTCACAATGACACCTTCCAGGCCAGgtaatttaattggacatgattcttggtgattatatgtatgttcccatcagtcattgaaagaagaaatattaaaaattaactcaacccattttcattatat
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AATGGACATGTAGGGTTCATGTTGTCATGCTATGATGCTGAGCTCAGCTATGACACTGACACTAATACTTTTCAAGCTAGgta-taaaatatttcatg-tccatattcaacaca---atattttgcttattcttcatagaatgctataaactatactgtattgagg-attttag------
upper sequence: GLYMA14G04080.1 (Glycine max), 5'ss of exon 2
lower sequence: AT2G32560.1 (Arabidopsis thaliana), 5'ss of exon 2
AATGGCCATGTTGGATTTATGTTATCATGCTATGATGCTGAGCTTAGCTATGATCCTCACAATGACACCTTCCAGGCCAGgta--atttaattggacatgattcttggtgattatatgtatgttcccatcagtcattgaaagaagaaatattaaaaattaactcaacccattttcattatat
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AATGGACATGTAGGGTTCATGTTGTCATGCTATGATGCGGAGCTCAGCTATGATACTCACACGGATACGTTCCAAGCCAGgtataaaatatctaatgtccacatttgacgctaacaa--attttcttatttctcatcataagtttacgt-ttattggggagtttag----------------
upper sequence: GLYMA14G04080.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv06s0009g02700.t01 (Vitis vinifera), 5'ss of exon 2
AATGGCCATGTTGGATTTATGTTATCATGCTATGATGCTGAGCTTAGCTATGATCCTCACAATGACACCTTCCAGGCCAGgtaattt---aattggacatgatt---cttggtgattatat-gtatgttcccatcagtcattgaa-agaagaaatattaaaaat------taactcaaccc----attttcattatat-----
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AGTGGCCATGTTGGCTTTATGTTATCATGCTATGATGCAGAGCTTAGCTATGATTCCCACACTGATACCTTCCAGGCCAGgtaaatggagaaatgaccttcaagtagcccactcttcaaatagtattactctttcattcatgaattagataagaaattaaggatggtgggtggcttaaacctgagatgatttctgtattgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|209726760|gb|BW654851.1|BW654851EST: TAGCTATGATCCTCACAATGACACCTTCCAGGCCAG GTATCCACCACATGGAAGAAGGACAGTTGCAGTAGAGCATGGCATTCCATG
genomic: TAGCTATGATCCTCACAATGACACCTTCCAGGCCAGgtaatttaat ... tttattacagGTATCCACCACATGGAAGAAGGACAGTTGCAGTAGAGCATGGCATTCCATG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AATGGCCATGTTGGATTTATGTTATCATGCTATGATGCTGAGCTTAGCTATGATCCTCACAATGACACCTTCCAGGCCAGgtaatttaattggacatgattcttggtgattatatgtatgttcccatcagtcattgaaagaagaaatattaaaaattaactcaacccattttcattatat
- - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agaagaaa