1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GTTGATCAAGGGTGGCACGGTTGTGAATGCTCAGCACCACCAGATTGCTGATGTTTACGTGGAAGATGGCATCATTGTTGCAGTTAATCCTAACATCATGgtatttgatgaattgaaaccccctagcagtaacagagcttaatttgctttctaacaccttgtgtttttgttactttctgctttctaatgtatgattcatttccattcccag
species | Glycine max |
transcript | GLYMA14G04030.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ATGTTTACGTGGAAGATGGCATCATTGTTGCAGTTAATCCTAACATCAGG GTAGGAGATGACGTCACTGTCATTGATGCCACCGGCAAATATGTCATGCCAEST: gi|151410923|gb|EV280738.1|EV280738
genomic: ATGTTTACGTGGAAGATGGCATCATTGTTGCAGTTAATCCTAACATCATGgtatttgatg ... ccattcccagGTTGGTGATGACGTCACTGTCATTGATGCCACCGGCAAATATGTCATGCCA
EST: ATGTTTACGTGGAAGATGGCATCATTGTTGCAGTTAATCCTAACATCATG GTTGGTGATGACGTCACTGTCATTGATGCCACCGGCAAATATGTCATGCCAEST: gi|151406081|gb|EV275896.1|EV275896
genomic: ATGTTTACGTGGAAGATGGCATCATTGTTGCAGTTAATCCTAACATCATGgtatttgatg ... ccattcccagGTTGGTGATGACGTCACTGTCATTGATGCCACCGGCAAATATGTCATGCCA
EST: ATGTTTACGTGGAAGATGGCATCATTGTTGCAGTTAATCCTAACATCATG GTTGGTGATGACGTCACTGTCATTGATGCCACCGGCAAATATGTCATGCCA
genomic: ATGTTTACGTGGAAGATGGCATCATTGTTGCAGTTAATCCTAACATCATGgtatttgatg ... ccattcccagGTTGGTGATGACGTCACTGTCATTGATGCCACCGGCAAATATGTCATGCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGATCAAGGGTGGCACGGTTGTGAATGCTCAGCACCACCAGATTGCTGATGTTTACGTGGAAGATGGCATCATTGTTGCAGTTAATCCTAACATCATGgtatttgatgaattgaaaccccctagcagtaacagagcttaatttgctttctaacaccttgtgtttttgttactttctgctttctaatgtatgattcatttccattcccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG