Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTAGAGGAACGATCGATAGGTACAAGAAAGCATGTGCTGCCTCCACAAATCCAGAATCTGTCTCTGAAGCTAATACACAGgtatatttagtaagctaaaaaaaaatcaaagaaatgatagaaaatgctcttgtttggttaatttggtccagaataaatgttgttttaaaattacggcata...

Basic information

species Glycine max
transcript GLYMA14G03100.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208229571|gb|GE020868.1|GE020868
EST:     CATGTGCTGCCTCCACAAATCCAGAATCTGTCTCTGAAGCTAATACACAG                         TTTTATCAGCAGGAAGCGTCCAAATTAAAACGACAAATCAGAGACATTCAG
genomic: CATGTGCTGCCTCCACAAATCCAGAATCTGTCTCTGAAGCTAATACACAGgtatatttag ... tcaataccagTTTTATCAGCAGGAAGCGTCCAAATTAAAACGACAAATCAGAGACATTCAG
EST: gi|193304745|gb|FK272230.1|FK272230
EST:     CATGTGCTGCCTCCACAAATCCAGAATCTGTCTCTGAAGCTAATACACAG                         TTTTATCAGCAGGAAGCGTCCAAATTAAAACGACAAATCAGAGACATTCAG
genomic: CATGTGCTGCCTCCACAAATCCAGAATCTGTCTCTGAAGCTAATACACAGgtatatttag ... tcaataccagTTTTATCAGCAGGAAGCGTCCAAATTAAAACGACAAATCAGAGACATTCAG
EST: gi|208097046|gb|GD894699.1|GD894699
EST:     CATGTGCTGCCTCCACAAATCCAGAATCTGTCTCTGAAGCTAATACACAG                         TTTTATCAGCAGGAAGCGTCCAAATTAAAACG
genomic: CATGTGCTGCCTCCACAAATCCAGAATCTGTCTCTGAAGCTAATACACAGgtatatttag ... tcaataccagTTTTATCAGCAGGAAGCGTCCAAATTAAAACG
EST: gi|208272616|gb|GE067942.1|GE067942
EST:     CATGTGCTGCCTCCACAAATCCAGAATCTGTCTCTGAAGCTAATACACAG                         TTTTATCAGCAGGAAGCGTCCAAATTAAAACGACAAATCAGGGACATTCAG
genomic: CATGTGCTGCCTCCACAAATCCAGAATCTGTCTCTGAAGCTAATACACAGgtatatttag ... tcaataccagTTTTATCAGCAGGAAGCGTCCAAATTAAAACGACAAATCAGAGACATTCAG
EST: gi|208309977|gb|GE109747.1|GE109747
EST:     CATGTGCTGCCTCCACAAATCCAGAATCTGTCTCTGAAGCTAATACACAG                         TTTTATCAGCAGGAAGCGTCCAAATTAAAACGACAAATCAGAGACATTCCG
genomic: CATGTGCTGCCTCCACAAATCCAGAATCTGTCTCTGAAGCTAATACACAGgtatatttag ... tcaataccagTTTTATCAGCAGGAAGCGTCCAAATTAAAACGACAAATCAGAGACATTCAG
EST: gi|193521334|gb|FK480375.1|FK480375
EST:     CATGTGCTGCCTCCACAAATCCAGAATCTGTCTCTGAAGCTAATACACAG                         TTTTATCAGCAGGAAGCGTCCAAATTAAAACGACAAATCAGAGACATTCAG
genomic: CATGTGCTGCCTCCACAAATCCAGAATCTGTCTCTGAAGCTAATACACAGgtatatttag ... tcaataccagTTTTATCAGCAGGAAGCGTCCAAATTAAAACGACAAATCAGAGACATTCAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGTTAGAGGAACGATCGATAGGTACAAGAAAGCATGTGCTGCCTCCACAAATCCAGAATCTGTCTCTGAAGCTAATACACAGgtatatttagtaagctaaaaaaaaatcaaagaaatgatagaaaatgctcttgtttggttaatttggtccagaataaatgttgttttaaaattacggcata

- - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC