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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCGTGAGTTGGCCGAAAAGGAGCCTGAAAATGGCGTCTTCAGACTACTCCGAAGTGATGTTACTCGGTTCCTTACAACAATACTTATTGGCACAACgtattctccttgcattgatcttattattgaaaattttccttttttttcggtgtagaatgtttctcatgctagtgttttgttgtatgcag

Basic information

species Glycine max
transcript GLYMA14G01920.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G01920.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os03g39640.1 (Oryza sativa), 5'ss of exon 2
GTTCGTGAGTTGGCCGAAAAGGAGCCTGAAAATGGCGTCTTCAGACTACTCCGAAGTGATGTTACTCGGTTCCTTACAACAATACTTATTGGCACAACgtattctccttgcattgatcttattattgaaaattttccttttttttcggtgtagaatgtttctcatgctagtgttttgtt-gtatgcag-----------
|||||||||||||| |||||||| ||||||||||| || |||||| | |||||||||||||||||||| ||||| ||||| ||||| |||||||||||||| | |  ||  |   || |  |     |   || |  | ||||||   | ||     | |    |  | | |||   |   ||  ||            
GTTCGTGAGTTGGCTGAAAAGGAACCTGAAAATGGTGTTTTCAGAATGCTCCGAAGTGATGTTACTCGCTTCCTGACAACCATACTCATTGGCACAACgtaattta-ttaaacctatgtgttctgccatgtttattatattttttttctataatccatattatgtcattgagttcaatccatacccacaatatgccact

upper sequence: GLYMA14G01920.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G55930.1 (Arabidopsis thaliana), 5'ss of exon 2
GTTCGTGAGTTGGCCGAAAAGGAGCCTGAAAATGGCGTCTTCAGACTACTCCGAAGTGATGTTACTCGGTTCCTTACAACAATACTTATTGGCACAACgtatt--ctccttgcattgatcttattattgaaaattttccttttttttcggtgtagaatgtttctcatgctagtgttttg--ttgtatgcag
|| || |||||||| ||||| ||||||||||||||||| |||||  | ||||| |||||||||||  | ||  | ||||| ||||||||||| |||||||| |   |  ||  |||  |   | | |||    ||||  | ||   | |        ||| ||| |   | ||  ||||  || |    ||
GTGCGCGAGTTGGCTGAAAAAGAGCCTGAAAATGGCGTTTTCAGGATGCTCCGCAGTGATGTTACCAGATTTTTGACAACCATACTTATTGGAACAACgtaatggttttttctattagttagaatgttgttttttttaatgttcgcttgaatcgttttgtctcttaactttgttctttggatttttcttag

upper sequence: GLYMA14G01920.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv19s0090g01820.t01 (Vitis vinifera), 5'ss of exon 2
GTTCGTGAGTTGGCCGAAAAGGAGCCTGAAAATGGCGTCTTCAGACTACTCCGAAGTGATGTTACTCGGTTCCTTACAACAATACTTATTGGCACAACgtattctc-cttgcattgatcttattattgaaaattttcctttttt-ttcggtgtagaat-gtttctcatgctag-tgttttgt-tgtatgcag
|| |||||||| || ||||||||| |||| ||||| ||||||| | | ||||| |||||||||||||| ||| | || || |||||||| ||||||||||| | ||  || | ||| |   ||||| |   ||  |  |||    |||| | |    | |||||| ||  ||| | || | | |||   |||
GTGCGTGAGTTAGCTGAAAAGGAGTCTGAGAATGGTGTCTTCAAAATGCTCCGCAGTGATGTTACTCGTTTCTTAACGACTATACTTATAGGCACAACgtaatgtcattttcgttgttgacattatggtttatcatgttttcagattcgatttgattttgtttcttatcatagatattgtttatgttctcag