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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGGGCAAGCTCCTGCAAGACAAGCTGCTCTTGGAGCAGGAATATCCAATTCAGTTATCTGCACTACCGTTAACAAAGTTTGTGCATCAGGAATGAAAGgtgtgtttataataaaaacaattctatttgtttctttgtatttttatttaaaaatatagaaaaaggatattaaccttgttctggttattgcag

Basic information

species Glycine max
transcript GLYMA14G00760.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G00760.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os09g07830.1 (Oryza sativa), 5'ss of exon 4
TTGGGGCAAGCTCCTGCAAGACAAGCTGCTCTTGGAGCAGGAATATCCAATTCAGTTATCTGCACTACCGTTAACAAAGTTTGTGCATCAGGAATGAAAGgtgt--gtttataataaaaacaattctatttgtttctttgtatttttatttaaaaatatagaaaaaggatattaaccttgttctggttattgcag
|||||||||||||||||||||||||||||| | || ||||| ||| | ||  ||||| | ||||   | |||||||||||||| ||||| || |||||||||    ||| || |    | |  ||||||   ||   ||  |     | ||| |  ||    |  | |   ||    || ||    ||  |||||
TTGGGGCAAGCTCCTGCAAGACAAGCTGCTTTAGGTGCAGGGATACCAAACACAGTTGTTTGCAGCGCAGTTAACAAAGTTTGCGCATCTGGCATGAAAGgttacagttcatga-ggcagcctttctataaattctgttcaaga---aattatatttacctgatcatgggcttgtttttatttccttt-ctgcag

upper sequence: GLYMA14G00760.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM5G866758_T02 (Zea mays), 5'ss of exon 4
TTGGGGCAAGCTCCTGCAAGACAAGCTGCTCTTGGAGCAGGAATATCCAATTCAGTTATCTGCACTACCGTTAACAAAGTTTGTGCATCAGGAATGAAAGgtgtgtttataataaaaacaattctatttgtttctttgtatttttatttaaaaatatagaaaaaggatatta----accttgttctggttattgcag-----------
|||||||||||||||||||| ||||||||||| || || || ||| | || || ||| | ||||| || ||||||||||| |||||||| || ||||||||| ||     |||  ||   || || | |||   | |||| | |  |   |    | ||||    || ||||    ||| || ||| ||| |                
TTGGGGCAAGCTCCTGCAAGGCAAGCTGCTCTGGGTGCCGGGATACCAAACTCTGTTGTTTGCACCACTGTTAACAAAGTCTGTGCATCTGGCATGAAAGgtttg-----aatcgaatttat-ctgtctgtccttgtgtactctgctcagagttcacagaagtgagagattacctgaccatgctcttgttttcctttcctatatgcag

upper sequence: GLYMA14G00760.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G085474_T04 (Zea mays), 5'ss of exon 4
TTGGGGCAAGCTCCTGCAAGACAAGCTGCTCTTGGAGCAGGAATATCCAATTCAGTTATCTGCACTACCGTTAACAAAGTTTGTGCATCAGGAATGAAAGgtgtgtttataataaaaacaattctatttgtttctttg-tatttttatttaaaaatatagaaaaaggatattaaccttgttctggttattgcag-----------------------------------
||||| |||||||||||||| ||||| ||||| || ||||| ||| | ||  | ||| | ||||| || ||||||||||| || ||||| || ||||||||| ||    ||||  |   |    | ||||| |  ||| | |  ||  |    | | |     |   || | ||   ||||| |||   ||                                      
TTGGGACAAGCTCCTGCAAGGCAAGCCGCTCTGGGTGCAGGGATACCAAACACTGTTGTTTGCACCACTGTTAACAAAGTCTGCGCATCTGGCATGAAAGgtctgaagctaattcatctatccatgtttgtataattgatctgcttgctgttcattgttttttacacatgtgaag--tgttcaggtgtgtgtgtatcatctgaccaattactctctgcacactctgcag

upper sequence: GLYMA14G00760.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv12s0057g01200.t01 (Vitis vinifera), 5'ss of exon 4
TTGGGGCAAGCTCCTGCAAGACAAGCTGCTCTTGGAGCAGGAATATCCAATTCAGTTATCTGCACTACCGTTAACAAAGTTTGTGCATCAGGAATGAAAGgtgtgtttataataaaaacaattctatttgtttctttgtatttttatttaaaaatatagaaaaaggatattaacctt---gttctggttattgcag
|| || || |||||||| |||||||||||  | || ||||||||| | ||||||||  |||| || ||| | |||||||||||||||||||||||||||||||    | ||  |  |  ||    || | || || | |      |  | | | || ||   ||    ||    |||    | ||||| |||||||
TTAGGACAGGCTCCTGCTAGACAAGCTGCATTAGGTGCAGGAATACCTAATTCAGTGGTCTGTACCACCATCAACAAAGTTTGTGCATCAGGAATGAAAGgtgccactctatcatcagaaacagcatcttttcctctttccccaaaactgacactaaagtgtaatatcatggttcttttaatgctggtaattgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10843553|gb|BF066841.1|BF066841
EST:     TTCAGTTATCTGCACTACCGTTAACAAAGNTTGTGCATCAGGAATGAAAG                         CTGCAATGCTTGCTGCACAGAGTATTCAATTAGGCACAAATGATGTTGTTG
genomic: TTCAGTTATCTGCACTACCGTTAACAAAGTTTGTGCATCAGGAATGAAAGgtgtgtttat ... gttattgcagCTGCAATGCTTGCTGCACAGAGTATTCAATTAGGCACAAATGATGTTGTTG
EST: gi|19052939|gb|BM731606.1|BM731606
EST:     TTCAGTTATCTGCACTACCGTTAACAAAGTTTGTGCATCAGGAATGAAAG                         CTGCAATGCTTGCTGCACAGAGTATTCAATTAGGCACAAATGATGTTGTTG
genomic: TTCAGTTATCTGCACTACCGTTAACAAAGTTTGTGCATCAGGAATGAAAGgtgtgtttat ... gttattgcagCTGCAATGCTTGCTGCACAGAGTATTCAATTAGGCACAAATGATGTTGTTG
EST: gi|193384949|gb|FK351921.1|FK351921
EST:     GTTAACAAAGTTTGTGCATCAGGAATGAAAG                         CTGCAATGCTTGCTGCACAGAGTATTCAATTAAGCATAAATGATGTTGTTG
genomic: GTTAACAAAGTTTGTGCATCAGGAATGAAAGgtgtgtttat ... gttattgcagCTGCAATGCTTGCTGCACAGAGTATTCAATTAGGCACAAATGATGTTGTTG
EST: gi|192329988|gb|FK021574.1|FK021574
EST:     TTCAGTTATCTGCACTACCGTTAACAAAGTTTGTGCATCAGGAATGAAAG                         CTGCAATGCTTGCTGCACAGAGTATTCAATTAGGCACAAATGATGTTGTTG
genomic: TTCAGTTATCTGCACTACCGTTAACAAAGTTTGTGCATCAGGAATGAAAGgtgtgtttat ... gttattgcagCTGCAATGCTTGCTGCACAGAGTATTCAATTAGGCACAAATGATGTTGTTG
EST: gi|37993878|gb|CF805624.1|CF805624
EST:     TTCAGTTATCTGCACTACCGTTAACAAAGTTTGTGCATCAGGAATGAAAG                         CTGCAATGCTTGCTGCACAGAGTATTCAATTAGGCACAAATGATGTTGTTG
genomic: TTCAGTTATCTGCACTACCGTTAACAAAGTTTGTGCATCAGGAATGAAAGgtgtgtttat ... gttattgcagCTGCAATGCTTGCTGCACAGAGTATTCAATTAGGCACAAATGATGTTGTTG