Sequence
atgc intronic sequence ATGC exonic sequenceATTATGGCAGTCAAGAAGAATATCGAAGATGTACAAGGCAAAGACAATTACCCATGTGGACAGCAATTGCTCATTCACAATGgtaaggttttgaaagatgaaactactttatccgacaataaggtctctgaggatggttttcttgttgtcatgcttagtaaggtacctttactttcttcctt...
Basic information
species | Glycine max |
transcript | GLYMA13G44910.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G44910.2 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os02g08300.1 (Oryza sativa), 5'ss of exon 2
ATTATGGCAGTCAAGAAGAATATCGAAGATGTACAAGGCAAAGACAATTACCCATGTGGACAGCAATTGCTCATTCACAATGgtaaggttttgaaagatgaaactactttatccgacaataaggtctctgaggatggttttcttgttgtcatgcttagtaaggtacctttactttcttcctt--------------------------------------------------------------------------------
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--------------------------------------------------------------ACAGTTGCTGATTCACAATGGCAAGGTTTTGAAAGATGAAAGTACATTGGAAGAGAACAAAGTCAGTGAAGTTGGGTTTTTAGTTGTCATGCTTAGTAAGgtaggccgcgtatgtgctgtatataatttaaatggtgatgttatttattacgcttcatttaattcttttctgactggatgctgggtgtaacggtgcagca
upper sequence: GLYMA13G44910.2 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G143462_T06 (Zea mays), 5'ss of exon 2
ATTATGGCAGTCAAGAAGAATATCGAAGATGTACAAGGCAAAGACAATTACCCATGTGGACAGCAATTGCTCATTCACAATGgtaaggttttgaaagatgaaactactttatccgacaataaggtctctgaggatggttttcttgttgtcatgcttagtaaggt--acctttactttcttcctt------------------------------------------------------------------------------
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--------------------------------------------------------------ACAACTGCTGATTTTCAATGGAAAGGTCTTGAAAGATGAAAGTACATTGGAAGAGAATAAAGTCAATGAGGATGGGTTTCTAGTTGTCATGCTTAGTAAGgttgggttctaatacatctctgtactacacattttcagatagatatgatgttttactgaagtatttttcattttagtctgataatgttaccacttgattt
upper sequence: GLYMA13G44910.2 (Glycine max), 5'ss of exon 2
lower sequence: AT1G79650.1 (Arabidopsis thaliana), 5'ss of exon 2
ATTATGGCAGTCAAGAAGAATATCGAAGATGTACAAGGCAAAGACAATTACCCATGTGGACAGCAATTGCTCATTCACAATGgtaaggttttgaaagatgaaactactttatccgacaataaggtctctgaggatggttttcttgttgtcatgcttagtaaggtacctttactttcttcctt--------------------------------------------------------------------------------
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--------------------------------------------------------------GCAATTGTTGATTCACAATGGAAAAGTTTTGAAAGATGAAACTAGCCTGGTGGAGAACAAAGTTACGGAGGAAGGATTTCTCGTCGTTATGCTTAGCAAGgtaacagttcaaatctggctactgcaaagatcatacttcttttatcttcaacaaatcagtcttcttatttaccttaaacaaggataaaagctgatgaata
upper sequence: GLYMA13G44910.2 (Glycine max), 5'ss of exon 2
lower sequence: AT1G16190.1 (Arabidopsis thaliana), 5'ss of exon 2
ATTATGGCAGTCAAGAAGAATATCGAAGATGTACAAGGCAAAGACAATTACCCATGTGGACAGCAATTGCTCATTCACAATGgtaaggttttgaaagatgaaactactttatccgacaataaggtctctgaggatggttttcttgttgtcatgcttagtaaggtacct--ttactttcttcctt------------------------------------------------------------------------------
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--------------------------------------------------------------GCAATTACTGATTCACAATGGAAAGGTTTTGAAAGATGAAACTACCTTGGTGGAGAACAAGGTTACCGAGGAGGGTTTTCTTGTCGTGATGCTTAGCAAGgtacctatctgatttcttttatgatcctagatagtgcttagtgtgagtcactctaagcaacctggatttatatatccttcttagtcccattagatatagtMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|18040649|gb|BM308934.1|BM308934EST: ACAAGGCAAAGACAATTACCCATGTGGACAGCAATTGCTCATTCACAATG GGTAAAACCTTGGGATCTGCTGGCATTTCATCAACTCAG
genomic: ACAAGGCAAAGACAATTACCCATGTGGACAGCAATTGCTCATTCACAATGgtaaggtttt ... tcatttgcagGGTAAAACCTTGGGATCTGCTGGCATTTCATCAACTCAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTATGGCAGTCAAGAAGAATATCGAAGATGTACAAGGCAAAGACAATTACCCATGTGGACAGCAATTGCTCATTCACAATGgtaaggttttgaaagatgaaactactttatccgacaataaggtctctgaggatggttttcttgttgtcatgcttagtaaggtacctttactttcttcctt
- - - - - - - - - - - - - - - - - - GCAAAG