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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAAAGGAGGTGGAAAACAACTTTTTGTCATTGAATTTGGAGGTGAAGAAATCTTCTGTAAAACAAGAGgttagttgtgtctgccaattctccgatccttttttaagcggttcttccaattatggagttgatttaatggaattactgttctgtaagacttaaaaattaa...

Basic information

species Glycine max
transcript GLYMA13G44730.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213610715|gb|DB961190.1|DB961190
EST:     ACTTTTTGTCATTGAATTTGGAGGTGAAGAAATCTTCTGTAAAACAAGAG                         TCTGCTGGTGCCTTGGCGGAGGAGCTGAAGCGGGTGAGTGCAGAAAACAAG
genomic: ACTTTTTGTCATTGAATTTGGAGGTGAAGAAATCTTCTGTAAAACAAGAGgttagttgtg ... gccatttcagTCTGCTGGTGCCTTGGCGGAGGAGCTGAAGCGGGTGAGTGCAGAAAACAAG
EST: gi|7234833|gb|AW570166.1|AW570166
EST:     ACTTTTTGTCATTGAATTTGGAGGTGAAGAAATCTTCTGTAAAACAAGAG                         TCTGCTGGTGCCTTGGCGGAGGAGCTGAAGCGGGTGAGTGCAGAAAACAAG
genomic: ACTTTTTGTCATTGAATTTGGAGGTGAAGAAATCTTCTGTAAAACAAGAGgttagttgtg ... gccatttcagTCTGCTGGTGCCTTGGCGGAGGAGCTGAAGCGGGTGAGTGCAGAAAACAAG
EST: gi|209728203|gb|BW651638.1|BW651638
EST:     ACTTTTTGTCATTGAATTTGGAGGTGAAGAAATCTTCTGTAAAACAAGAG                         TCTGCTGGTGCCTTGGCGGAGGAGCTGAAGCGGGTGAGTGCAGAAAACAAG
genomic: ACTTTTTGTCATTGAATTTGGAGGTGAAGAAATCTTCTGTAAAACAAGAGgttagttgtg ... gccatttcagTCTGCTGGTGCCTTGGCGGAGGAGCTGAAGCGGGTGAGTGCAGAAAACAAG
EST: gi|5820418|gb|AI988624.1|AI988624
EST:     TCTGTAAAACAAGAG                         TCTGCTGGTGCCTTGGCGGAGGAGCTGAAGCGGGTGAGTGCAGAAAACAAG
genomic: TCTGTAAAACAAGAGgttagttgtg ... gccatttcagTCTGCTGGTGCCTTGGCGGAGGAGCTGAAGCGGGTGAGTGCAGAAAACAAG
EST: gi|209710064|gb|BW653545.1|BW653545
EST:     ACTTTTTGTCATTGAATTTGGAGGTGAAGAAATCTTCTGTAAAACAAGAG                         TCTGCTGGTGCCTTGGCGGAGGAGCTGAAGCGGGTGAGTGCAGAAAACAAG
genomic: ACTTTTTGTCATTGAATTTGGAGGTGAAGAAATCTTCTGTAAAACAAGAGgttagttgtg ... gccatttcagTCTGCTGGTGCCTTGGCGGAGGAGCTGAAGCGGGTGAGTGCAGAAAACAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAAAAGGAGGTGGAAAACAACTTTTTGTCATTGAATTTGGAGGTGAAGAAATCTTCTGTAAAACAAGAGgttagttgtgtctgccaattctccgatccttttttaagcggttcttccaattatggagttgatttaatggaattactgttctgtaagacttaaaaattaa

- - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - -  TGGAGG
- - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - -  AAGAAA