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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGTCAAGGATAATCCTGTTATGATTTACATGAAAGGTGTGCCTGATTTTCCACAGTGTGGATTTAGTTCTCTTGCAGTTAGAGTGTTACAACAATATGgtaagtaacattgtgcacctataacttaagtgtagacttgggactgatataggataactattctattaaacactatggtgaattgatgattaatttgcta...

Basic information

species Glycine max
transcript GLYMA13G44000.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G44000.2 (Glycine max), 5'ss of exon 2
lower sequence: AT3G15660.1 (Arabidopsis thaliana), 5'ss of exon 3
GATGTCAAGGATAATCCTGTTATGATTTACATGAAAGGTGTGCCTGATTTTCCACAGTGTGGATTTAGTTCTCTTGCAGTTAGAGTGTTACAACAATATGgtaagtaacattgtg----cacctataacttaagtgtagacttggga--ctgatataggataactattctattaaacactatggtgaattgatgattaatttgcta------
||||| |||||||||||||||||||| |||||||||||||| ||||| | ||| |||||||| ||||| || || || || ||||| || || |||||| ||||||    |||          |  |||| |||        || ||   |  | ||  ||     ||    |      | || |  | |      | || | ||       
GATGTGAAGGATAATCCTGTTATGATCTACATGAAAGGTGTCCCTGAATCTCCTCAGTGTGGGTTTAGCTCACTAGCCGTCAGAGTTTTGCAGCAATATAgtaagttttgttgaaatgttgattgaaactgaagaagccttctgtgaattttctttactattggcgttaggctctgtgttctgatctactatcttgtgatatccttctttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17154054|gb|BM143987.1|BM143987
EST:     TCCACAGTGTGGATTTAGTTCTCTTGCAGTTAGAGTGTTACAACAATATG                         ATGTTCCTTTAAGTGCTAGAAACATTTTGGAGGATCCTGAACTGAAAAATG
genomic: TCCACAGTGTGGATTTAGTTCTCTTGCAGTTAGAGTGTTACAACAATATGgtaagtaaca ... gctattgcagATGTTCCTTTAAGTGCTAGAAACATTTTGGAGGATCCTGAACTGAAAAATG
EST: gi|151403951|gb|EV273761.1|EV273761
EST:     TCCACAGTGTGGATTTAGTTCTCTTGCAGTTAGAGTGTTACAACAATATG                         ATGTTCCTTTAAGTGCTAGAAACATTTTGGAGGATCCTGAACTGAAAAATG
genomic: TCCACAGTGTGGATTTAGTTCTCTTGCAGTTAGAGTGTTACAACAATATGgtaagtaaca ... gctattgcagATGTTCCTTTAAGTGCTAGAAACATTTTGGAGGATCCTGAACTGAAAAATG
EST: gi|58019023|gb|CX705765.1|CX705765
EST:     TCCCCAGTGTGGATTTAGTTCTTTTGCAGTTAGAGTGTTACAACAATATG                         ATGTTCCTTTAAGTGCTAGAAACA-TTTGGAAGATCCTGAACTGAAAAATG
genomic: TCCACAGTGTGGATTTAGTTCTCTTGCAGTTAGAGTGTTACAACAATATGgtaagtaaca ... gctattgcagATGTTCCTTTAAGTGCTAGAAACATTTTGGAGGATCCTGAACTGAAAAATG
EST: gi|58018776|gb|CX705518.1|CX705518
EST:     TCCACAGTGTGGATTTAGTTCTCTTGCAGTTAGAGTGTTACAACAATATG                         ATGTTCCTTTAAGTGCTAGAAACATTTTGGAGGATCCTGAACTGAAAAATG
genomic: TCCACAGTGTGGATTTAGTTCTCTTGCAGTTAGAGTGTTACAACAATATGgtaagtaaca ... gctattgcagATGTTCCTTTAAGTGCTAGAAACATTTTGGAGGATCCTGAACTGAAAAATG
EST: gi|193689192|gb|FK631403.1|FK631403
EST:     TCCACAGTGTGGATTTAGTTCTCTTGCAGTTAGAGTGTTACAACAATATG                         ATGTTCCTTTAAGTGCTAGAAACATTTTGGAGGATCCTGAACTGAAAAATG
genomic: TCCACAGTGTGGATTTAGTTCTCTTGCAGTTAGAGTGTTACAACAATATGgtaagtaaca ... gctattgcagATGTTCCTTTAAGTGCTAGAAACATTTTGGAGGATCCTGAACTGAAAAATG
EST: gi|31462442|gb|CD404470.1|CD404470
EST:     TCCACTGTGTGGATTTAGTTCTCTTGCAGTTAGAGTGTTACAACAATATG                         ATGTTCCTTTAAGTGCTAGAAACATTTTGGAGGATCCTGAACTGAAAAATG
genomic: TCCACAGTGTGGATTTAGTTCTCTTGCAGTTAGAGTGTTACAACAATATGgtaagtaaca ... gctattgcagATGTTCCTTTAAGTGCTAGAAACATTTTGGAGGATCCTGAACTGAAAAATG
EST: gi|12690674|gb|BG157010.1|BG157010
EST:     TCCACAGTGTGGATTTAGTTCTC-TGGAGTTAGAGTGTTACAACAATATG                         ATGTTCCTTTAAGTGCTAGAAACATTTTGGAGGATCCTGAACTGAAAAATG
genomic: TCCACAGTGTGGATTTAGTTCTCTTGCAGTTAGAGTGTTACAACAATATGgtaagtaaca ... gctattgcagATGTTCCTTTAAGTGCTAGAAACATTTTGGAGGATCCTGAACTGAAAAATG