1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ATGCAGGAATTGCTCCGAGGAGCTAAGAATGCCGTGTCTTTGGCCCAGgttttttttttgtctctccaatgctactttatatttattaatcaaaccccttggcgatttttgcgaggcactgaaaggaggatatggtgtttccaatgtc...
species | Glycine max |
transcript | GLYMA13G43830.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ATGCAGGAATTGCTCCGAGGAGCTAAGAATGCCGTGTCTTTGGCCCAG GGGGTGGTTTATTGGCAGCCTCCCAAGCAAGCATTGGAAAAAGTGAAAGAAEST: gi|15816082|gb|BI788357.1|BI788357
genomic: ATGCAGGAATTGCTCCGAGGAGCTAAGAATGCCGTGTCTTTGGCCCAGgttttttttt ... tctactgtagGGGGTGGTTTATTGGCAGCCTCCCAAGCAAGCATTGGAAAAAGTGAAAGAA
EST: ATGCAGGAATTGCTCCGAGGAGCTAAGAATGCCGTGTCTTTGGCCCAG GGGGTGGTTTATTGGCAGCCTCCCAAGCAAGCATTGGAAAAAGTGAAAGAAEST: gi|5605984|gb|AI900082.1|AI900082
genomic: ATGCAGGAATTGCTCCGAGGAGCTAAGAATGCCGTGTCTTTGGCCCAGgttttttttt ... tctactgtagGGGGTGGTTTATTGGCAGCCTCCCAAGCAAGCATTGGAAAAAGTGAAAGAA
EST: ATGCAGGAATTGCTCCGAGGAGCTAAGAATGCCGTGTCTTTGGCCCAG GGGGTGGTTTATTGGCAGCCTCCCAAGCAAGCATTGGAAAAAGTGAAAGAA
genomic: ATGCAGGAATTGCTCCGAGGAGCTAAGAATGCCGTGTCTTTGGCCCAGgttttttttt ... tctactgtagGGGGTGGTTTATTGGCAGCCTCCCAAGCAAGCATTGGAAAAAGTGAAAG-A
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGCAGGAATTGCTCCGAGGAGCTAAGAATGCCGTGTCTTTGGCCCAGgttttttttttgtctctccaatgctactttatatttattaatcaaaccccttggcgatttttgcgaggcactgaaaggaggatatggtgtttccaatgtc
- - - - - - - - GAGGAG
- - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctctcca