1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AGGTGGTGGTAGAGTTGCAGCAGAATGGTGGTGATGGCAAAGTGTTCTCTCCCTCTTCTGCAAATACAGCTGTGTCCCAGCCTAACACCTCTCAGAAAAGgtactccaccttttttctttcttgtatccattttttgttacttttcgacagaggatattcattcccagagtcacgtttcatttttattttctcgtgtttg...
species | Glycine max |
transcript | GLYMA13G43050.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CCCTCTTCTGCAAATACAGCTGTGTCCCAGCCTAACACCTCTCAGAAAAG AACTGCTCCTGCTCCAGTGGTGGGGTGGCCCCCAATTCGTTCATTCAGGAAEST: gi|11689099|gb|BF596775.1|BF596775
genomic: CCCTCTTCTGCAAATACAGCTGTGTCCCAGCCTAACACCTCTCAGAAAAGgtactccacc ... aaacaaacagAACTGCTCCTGCTCCAGTGGTGGGGTGGCCCCCAATTCGTTCATTCAGGAA
EST: CCCTCTTCTGCAAATACAGCTGTGTCCCAGCCTAACACCTCTCAGAAAAG AACTGCTCCTGCTCCAGTGGTGGGGTGGCCCCCAATTCGTTCATTCAGGAAEST: gi|7692407|gb|AW760514.1|AW760514
genomic: CCCTCTTCTGCAAATACAGCTGTGTCCCAGCCTAACACCTCTCAGAAAAGgtactccacc ... aaacaaacagAACTGCTCCTGCTCCAGTGGTGGGGTGGCCCCCAATTCGTTCATTCAGGAA
EST: CCCTCTTCTGCAAATACAGCTGTGTCCCAGCCTAACACCTCTCAGAAAAG AACTGCTCCTGCTCCAGTGGTGGGGTGGCCCCCAATTCGTTCATTCAGGAA
genomic: CCCTCTTCTGCAAATACAGCTGTGTCCCAGCCTAACACCTCTCAGAAAAGgtactccacc ... aaacaaacagAACTGCTCCTGCTCCAGTGGTGGGGTGGCCCCCAATTCGTTCATTCAGGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGTGGTGGTAGAGTTGCAGCAGAATGGTGGTGATGGCAAAGTGTTCTCTCCCTCTTCTGCAAATACAGCTGTGTCCCAGCCTAACACCTCTCAGAAAAGgtactccaccttttttctttcttgtatccattttttgttacttttcgacagaggatattcattcccagagtcacgtttcatttttattttctcgtgtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG