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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATAATTTCAGCTATTGAATTTGACAAGTCCGGTGATCATCTTGCTACTGGTGATCGGGGTGGTCGAGTGGTTCTCTTTGAGAGAACAGATACAAAAGATgtaagactgatttttgcttatgcaagtgtttttgtgtcaaaaaaacaaacaaacagattccttgttatgcacttaattttgtaacatgtatgtttgctgaaacatgcag

Basic information

species Glycine max
transcript GLYMA13G42800.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G42800.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv09s0002g02470.t01 (Vitis vinifera), 5'ss of exon 2
CATAATTTCAGCTATTGAATTTGACAAGTCCGGTGATCATCTTGCTACTGGTGATCGGGGTGGTCGAGTGGTTCTCTTTGAGAGAACAGATACAAAAGATgtaagactgatttttgcttatgcaagt-----gtttttgtgtcaaaaa--aacaaacaaacagattccttgttatgcacttaattttgtaacatgtatgtttgctgaaacatgcag
 || ||||| || ||||| ||||| || || ||||| || ||||||||||||||||| || || || |||||||| |||||||| || |||||||| |||||  |  |  |||||     | |  ||     |||| ||| || |||    | |      |  | |  |  |  | |  | ||| || | | || | | |   ||| ||  || ||
TATTATTTCTGCAATTGAGTTTGATAAATCTGGTGACCACCTTGCTACTGGTGATCGTGGGGGCCGGGTGGTTCTATTTGAGAGGACTGATACAAAGGATgtgcg-ttcttttttaacactactggtctttagtttctgtatccaaacttgataggttgccttactgttcttgtttctttcaatattatgatatctttatacactgtaatgtgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193625400|gb|FK575218.1|FK575218
EST:     GTGATCGGGGTGGTCGAGTGGTTCTCTTTGAGAGAACAGATACAAAAGAT                         CATGGTGGATCAAGTAGGGATTTGGAGAGGGTGGACTATTCTATTGGTAGG
genomic: GTGATCGGGGTGGTCGAGTGGTTCTCTTTGAGAGAACAGATACAAAAGATgtaagactga ... aaacatgcagCATGGTGGATCAAGTAGGGATTTGGAGAGGGTGGACTATTCTATTGGTAGG
EST: gi|14258469|gb|BG881377.1|BG881377
EST:     GTGATCGGGGTGGTCGAGTGGTTCTCTTTGAGAGAACAGATACAAAAGAT                         CATGGTGGATCAAGTAGGGATTTGGAGAGGGTGGACTATTCTATTGGTAGG
genomic: GTGATCGGGGTGGTCGAGTGGTTCTCTTTGAGAGAACAGATACAAAAGATgtaagactga ... aaacatgcagCATGGTGGATCAAGTAGGGATTTGGAGAGGGTGGACTATTCTATTGGTAGG
EST: gi|15286432|gb|BI470323.1|BI470323
EST:     GTGATCGGGGTGGTCGAGTGGTTCTCTTTGAGAGAACAGATACAAAAGAT                         CATGGTGGATCAAGTAGGGATTTGGAGAGGGTGGACTATTCTATTGGTAGG
genomic: GTGATCGGGGTGGTCGAGTGGTTCTCTTTGAGAGAACAGATACAAAAGATgtaagactga ... aaacatgcagCATGGTGGATCAAGTAGGGATTTGGAGAGGGTGGACTATTCTATTGGTAGG
EST: gi|193333352|gb|FK300385.1|FK300385
EST:     GTGATCGGGGTGGTCGAGTGGTTCTCTTTGAGAGAACAGATACAAAAGAT                         CATGGTGGATCAAGTAGGGATTTGGAGAGGGTGGACTATTCTATTGGTAGG
genomic: GTGATCGGGGTGGTCGAGTGGTTCTCTTTGAGAGAACAGATACAAAAGATgtaagactga ... aaacatgcagCATGGTGGATCAAGTAGGGATTTGGAGAGGGTGGACTATTCTATTGGTAGG
EST: gi|208313579|gb|GE116513.1|GE116513
EST:     GTGATCGGGGTGGTCGAGTGGTTCTCTTTGAGAGAACAGATACAAAAGAT                         CATGGTGGATCAAGTAGGGATTTGGAGAGGGTGGACTATTCTATTGGTAGG
genomic: GTGATCGGGGTGGTCGAGTGGTTCTCTTTGAGAGAACAGATACAAAAGATgtaagactga ... aaacatgcagCATGGTGGATCAAGTAGGGATTTGGAGAGGGTGGACTATTCTATTGGTAGG
EST: gi|213605094|gb|DB956399.1|DB956399
EST:     GTGATCGGGGTGGTCGAGTGGTTCTCTTTGAGAGAACAGATACAAAAGAT                         CATGGTGGATCAAGTAGGGATTTGGAGAGGGTGGACTATTCTATTGGTAGG
genomic: GTGATCGGGGTGGTCGAGTGGTTCTCTTTGAGAGAACAGATACAAAAGATgtaagactga ... aaacatgcagCATGGTGGATCAAGTAGGGATTTGGAGAGGGTGGACTATTCTATTGGTAGG
EST: gi|209700206|gb|BW656297.1|BW656297
EST:     GTGATCGGGGTGGTCGAGTGGTTCTCTTTGAGAGAACAGATACAAAAGAT                         CATGGTGGATCAAGTAGGGATTTGGAGAGGGTGGACTATTCTATTGGTAGG
genomic: GTGATCGGGGTGGTCGAGTGGTTCTCTTTGAGAGAACAGATACAAAAGATgtaagactga ... aaacatgcagCATGGTGGATCAAGTAGGGATTTGGAGAGGGTGGACTATTCTATTGGTAGG
EST: gi|213614308|gb|DB958612.1|DB958612
EST:     GTGATCGGGGTGGTCGAGTGGTTCTCTTTGAGAGAACAGATACAAAAGAT                         CATGGTGGATCAAGTAGGGATTTGGAGAGGGTGGACTATTCTATTGGTAGG
genomic: GTGATCGGGGTGGTCGAGTGGTTCTCTTTGAGAGAACAGATACAAAAGATgtaagactga ... aaacatgcagCATGGTGGATCAAGTAGGGATTTGGAGAGGGTGGACTATTCTATTGGTAGG