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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCAAAAGGgtaagcaagcatttcacaaattctccaccccatttatttttcatgctattttccttttttctcggagcctaaagaggtaaaatttgattcttataacgtt...

Basic information

species Glycine max
transcript GLYMA13G41110.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151393247|gb|EV263122.1|EV263122
EST:     CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCAAAAGG                         GGAATATCTCAAGTCATGATTTCGAGAAAACG
genomic: CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCAAAAGGgtaagcaagc ... tctgttccagGGAATATCTCAAGTCATGATTTCGAGAAAACG
EST: gi|7145805|gb|AW507727.1|AW507727
EST:     CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCAAAAGG                         GGAATATCTCAAGTCATGATTTCGAGAAAACG
genomic: CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCAAAAGGgtaagcaagc ... tctgttccagGGAATATCTCAAGTCATGATTTCGAGAAAACG
EST: gi|207836538|gb|GD805751.1|GD805751
EST:     CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCAAAAGG                         GGAATATCTCAAGTCATGATTTCGAGAAAACG
genomic: CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCAAAAGGgtaagcaagc ... tctgttccagGGAATATCTCAAGTCATGATTTCGAGAAAACG
EST: gi|193340204|gb|FK307825.1|FK307825
EST:     CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCAAAAGG                         GGAATATCTCAAGTCATGATTTCGAGAAA-CGTTGAAGAAG
genomic: CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCAAAAGGgtaagcaagc ... tctgttccagGGAATATCTCAAGTCATGATTTCGAGAAAACGTTGAAGAAG
EST: gi|298163842|gb|HO012575.1|HO012575
EST:     CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCAAAAGG                         GGAATATCTCAAGTCATGATTTCGAGAAAACG
genomic: CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCAAAAGGgtaagcaagc ... tctgttccagGGAATATCTCAAGTCATGATTTCGAGAAAACG
EST: gi|193333062|gb|FK300808.1|FK300808
EST:     CTTATCATATTATCCAAAAGG                         GGAATATCTCAAGTCATGATTTCGAGAAAACG
genomic: CTTATCATATTATCCAAAAGGgtaagcaagc ... tctgttccagGGAATATCTCAAGTCATGATTTCGAGAAAACG
EST: gi|209698806|gb|BW675734.1|BW675734
EST:     CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCAAAAGG                         GGAATATCTCAAGTCATGATTTCGAGAAAACG
genomic: CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCAAAAGGgtaagcaagc ... tctgttccagGGAATATCTCAAGTCATGATTTCGAGAAAACG
EST: gi|193711572|gb|FK643037.1|FK643037
EST:     CCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCAAAAGG                         GGAATATCTCAAGTCATGATTTCGAGAAAACG
genomic: CCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCAAAAGGgtaagcaagc ... tctgttccagGGAATATCTCAAGTCATGATTTCGAGAAAACG
EST: gi|298164926|gb|HO010923.1|HO010923
EST:     CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCAAAAGG                         GGAATATCTCAAGTCATGATTTCGAGAAAACG
genomic: CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCAAAAGGgtaagcaagc ... tctgttccagGGAATATCTCAAGTCATGATTTCGAGAAAACG
EST: gi|9205325|gb|BE331549.1|BE331549
EST:     CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCAAAAGG                         GGAATATCTCAAGTCATGATTTCGAGAAAACG
genomic: CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCAAAAGGgtaagcaagc ... tctgttccagGGAATATCTCAAGTCATGATTTCGAGAAAACG
EST: gi|192326268|gb|FK015845.1|FK015845
EST:     CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCAAAAGG                         GGAATATCTCAAGTCATGATTTCGAGAAAACG
genomic: CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCAAAAGGgtaagcaagc ... tctgttccagGGAATATCTCAAGTCATGATTTCGAGAAAACG
EST: gi|15663192|gb|BI700563.1|BI700563
EST:     CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCAAAAGG                         GGAATATCTCAAGTCATGATTTCGAGAAAACG
genomic: CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCAAAAGGgtaagcaagc ... tctgttccagGGAATATCTCAAGTCATGATTTCGAGAAAACG
EST: gi|254346962|gb|GR856684.1|GR856684
EST:     CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCAAAAGG                         GGAATATCTCAAGTCATGATTTCGAGAAAACG
genomic: CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCAAAAGGgtaagcaagc ... tctgttccagGGAATATCTCAAGTCATGATTTCGAGAAAACG
EST: gi|298163921|gb|HO013566.1|HO013566
EST:     CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCAAAAGG                         GGAATATCTCAAGTCATGATTTCGAGAAAACG
genomic: CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCAAAAGGgtaagcaagc ... tctgttccagGGAATATCTCAAGTCATGATTTCGAGAAAACG
EST: gi|254344721|gb|GR851311.1|GR851311
EST:     CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCAAAAGG                         GGAATATCTCAAGTCATGATTTCGAGAAAACG
genomic: CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCAAAAGGgtaagcaagc ... tctgttccagGGAATATCTCAAGTCATGATTTCGAGAAAACG
EST: gi|151400903|gb|EV270717.1|EV270717
EST:     CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCAAAAGG                         GGAATATCTCAAGTCATGATTTCGAGAAAACG
genomic: CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCAAAAGGgtaagcaagc ... tctgttccagGGAATATCTCAAGTCATGATTTCGAGAAAACG
EST: gi|21888132|gb|BQ741345.1|BQ741345
EST:     CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCAAAAGG                         GGAATATCTCAAGTCATGATTTCGAGAAAACG
genomic: CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCAAAAGGgtaagcaagc ... tctgttccagGGAATATCTCAAGTCATGATTTCGAGAAAACG
EST: gi|298175659|gb|HO015178.1|HO015178
EST:     CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCAAAAGG                         GGAATATCTCAAGTCATGATTTCGAGAAAACG
genomic: CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCAAAAGGgtaagcaagc ... tctgttccagGGAATATCTCAAGTCATGATTTCGAGAAAACG
EST: gi|254346963|gb|GR856685.1|GR856685
EST:     CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCAAAAGG                         GGAATATCTCAAGTCATGATTTCGAGAAAACG
genomic: CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCAAAAGGgtaagcaagc ... tctgttccagGGAATATCTCAAGTCATGATTTCGAGAAAACG
EST: gi|10256009|gb|BE823775.1|BE823775
EST:     CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCAAAAGG                         GGAATATCTCAAGTCATGATTTCGAGAAAACG
genomic: CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCAAAAGGgtaagcaagc ... tctgttccagGGAATATCTCAAGTCATGATTTCGAGAAAACG
EST: gi|192323064|gb|FK016315.1|FK016315
EST:     CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCAAAAGG                         GGAATATCTCAAGTCATGATTTCGAGAAAACG
genomic: CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCAAAAGGgtaagcaagc ... tctgttccagGGAATATCTCAAGTCATGATTTCGAGAAAACG
EST: gi|208084810|gb|GD881064.1|GD881064
EST:     CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCAAAAGG                         GGAATATCTCAAGTCATGATTTCGAGAAAAACG
genomic: CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCAAAAGGgtaagcaagc ... tctgttccagGGAATATCTCAAGTCATGATTTCGAGAAAA-CG
EST: gi|6454783|gb|AW185466.1|AW185466
EST:     CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCAAAAGG                         GGAATATCTCAAGTCATGATTTCGAGAAAACG
genomic: CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCAAAAGGgtaagcaagc ... tctgttccagGGAATATCTCAAGTCATGATTTCGAGAAAACG
EST: gi|192326659|gb|FK017316.1|FK017316
EST:     CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCAAAAGG                         GGAATATCTCAAGTCATGATTTCGAGAAAACG
genomic: CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCAAAAGGgtaagcaagc ... tctgttccagGGAATATCTCAAGTCATGATTTCGAGAAAACG
EST: gi|209698805|gb|BW675733.1|BW675733
EST:     CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCAAAAGG                         GGAATATCTCAAGTCATGATTTCGAGAAAACG
genomic: CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCAAAAGGgtaagcaagc ... tctgttccagGGAATATCTCAAGTCATGATTTCGAGAAAACG
EST: gi|208149896|gb|GD944218.1|GD944218
EST:     CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCAAAAGG                         GGAATATCTCAAGTCATGATTTCGAAGAAAACG
genomic: CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCAAAAGGgtaagcaagc ... tctgttccagGGAATATCTCAAGTCATGATTTCGA-GAAAACG
EST: gi|298197536|gb|HO045015.1|HO045015
EST:     CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCAAAAGG                         GGAATATCTCAAGTCATGATTTCGAGAAAACG
genomic: CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCAAAAGGgtaagcaagc ... tctgttccagGGAATATCTCAAGTCATGATTTCGAGAAAACG
EST: gi|298195162|gb|HO043690.1|HO043690
EST:     CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCAAAAGG                         GGAATATCTCAAGTCATGACTTCGAGAAAACG
genomic: CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCAAAAGGgtaagcaagc ... tctgttccagGGAATATCTCAAGTCATGATTTCGAGAAAACG
EST: gi|151395761|gb|EV265638.1|EV265638
EST:     CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCAAAAGG                         GGAATATCTCAAGTCATGATTTCGAGAAAACG
genomic: CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCAAAAGGgtaagcaagc ... tctgttccagGGAATATCTCAAGTCATGATTTCGAGAAAACG
EST: gi|298171379|gb|HO016411.1|HO016411
EST:     CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCAAAAGG                         GGAATATCTCAAGTCATGATTTCGAGAAAACG
genomic: CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCAAAAGGgtaagcaagc ... tctgttccagGGAATATCTCAAGTCATGATTTCGAGAAAACG
EST: gi|208294332|gb|GE092163.1|GE092163
EST:     CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCAAAAGG                         GGAATATCTCAAGTCATGATTTCGAGAAAACG
genomic: CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCAAAAGGgtaagcaagc ... tctgttccagGGAATATCTCAAGTCATGATTTCGAGAAAACG
EST: gi|163921384|gb|EH038948.1|EH038948
EST:     CGCAGCCACGCGATCAGCTGCTGAAGGTACTTATCATATTATCCAAAAGG                         GGAATATCTCAAGTCATGATTTCGAGAAAACG
genomic: CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCAAAAGGgtaagcaagc ... tctgttccagGGAATATCTCAAGTCATGATTTCGAGAAAACG
EST: gi|208257813|gb|GE055352.1|GE055352
EST:     CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCAAAAGG                         GGAATACCTCAAGTCATGATTTCGAGAAAACG
genomic: CGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCAAAAGGgtaagcaagc ... tctgttccagGGAATATCTCAAGTCATGATTTCGAGAAAACG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTCGCAGCCACGCGATCAGCTGCTGAAGATACTTATCATATTATCCAAAAGGgtaagcaagcatttcacaaattctccaccccatttatttttcatgctattttccttttttctcggagcctaaagaggtaaaatttgattcttataacgtt

- - - - - - -  TCAGCT
- - - - - - - - CAGCTG
- - - - - - - -  AGCTGC
- - - - - - - - - GCTGCT
- - - - - - - - - - - CTGAAG
- - - - - - - - - - -  TGAAGA