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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTTTTCATTGTTGACTTGCGGGCCGACAAGAAGAAGATCAAGGATGCAGTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagcctttataaagtgatgcttatagaatttgtttgttgattcattattgctattttctaatgacaatggtatgcttgcagtgaatttgatattgcag...

Basic information

species Glycine max
transcript GLYMA13G40780.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G40780.2 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os04g42270.1 (Oryza sativa), 5'ss of exon 3
TGGTTTTCATTGTTGACTTGCGGGCCGACAAGAAGAAGATCAAGGATGCAGTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagcctttataaagtgatgcttatagaatttgtttgttgattcattat-tgctattttctaatgacaatggtatgcttgcagtgaatttgatattgcag
|||| |||||||||||| |   ||| ||||||||||||||||||| ||| |||||||||||||| || || ||||| |||||||| |||||  ||||||||| |||  ||      | || |||    | ||| |   ||||||   ||  |  | |  |  | ||||  |  |   ||| |||                 
TGGTCTTCATTGTTGACCTTAAGGCTGACAAGAAGAAGATCAAGGCTGCTGTCAAGAAGATGTACGACATCCAGGCAAAGAAAGTGAACACTCTGATCAGgttagcactttcct--tcatacttc---attttatcgcttgatttgctaggtagtgtagttaactgaccctacttgtcttccag-----------------

upper sequence: GLYMA13G40780.2 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os01g24690.3 (Oryza sativa), 5'ss of exon 2
TGGTTTTCATTGTTGACTTGCGGGCCGACAAGAAGAAGATCAAGGATGCAGTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagcctttataaagtgatgcttatagaatttgtttgttgattcattattgctattttctaatgacaatggtatgcttgcagtgaatttg-atattgcag
| || ||||| || ||| |   ||| |||||||||||||||||||  || ||||||||||||||||| || ||||| |||||||| |||||  |||||||||       ||| || | |   |  |     |||||  | | |  ||       ||| | || ||   |     || | | |  || |||   || | |||
TTGTCTTCATCGTCGACCTCAAGGCAGACAAGAAGAAGATCAAGGCAGCTGTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAGgt-------tattaactcaccttcct-----ttgttcatggctgaatacgcttcattctgta-tgttgacaacttggt-gtatcgattttctgtaatacag

upper sequence: GLYMA13G40780.2 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G124411_T04 (Zea mays), 5'ss of exon 3
TGGTTTTCATTGTTGACTTGCGGGCCGACAAGAAGAAGATCAAGGATGCAGTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagcctttataaagtgatgcttatagaatttgtttgttgattcattattgctattttctaatgacaatggtatgcttgcagtgaatttgatat-tgcag
| || |||||||| ||| |   ||| ||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||| || |||||| ||||||||| ||| |||         || |      ||||  ||||  ||   |||||  | || |  ||     | | ||| |||| | ||  | ||   | | |||
TTGTCTTCATTGTCGACCTCAAGGCAGACAAGAAGAAGATCAAGGCTGCTGTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAGgttagcatttg--gtccagtgtt------attttcttgtgcataatttatta-tgttgtgcaactgtga-gttattcttg-attgtgtctgtcctgtccag

upper sequence: GLYMA13G40780.2 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G083253_T04 (Zea mays), 5'ss of exon 3
TGGTTTTCATTGTTGACTTGCGGGCCGACAAGAAGAAGATCAAGGATGCAGTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagcctttataaagtgatgcttatagaatttgtttgttgattcattattgctattttctaatgacaatggtatgcttgcagtgaatttgatattgcag
|||| |||||||||||| |   ||| ||||||||||||||||||| ||| ||||||||||||||||| || ||||| ||||| || |||||||||||||||| |||  ||           |   |  ||||| ||  |  |    |||||  | || |  ||  | |  | ||| |||   |||  | ||         
TGGTCTTCATTGTTGACCTCAAGGCAGACAAGAAGAAGATCAAGGCTGCCGTCAAGAAGATGTATGACATCCAGGCAAAGAAGGTCAACACCTTGATCAGgttagcacttgcc--------ccagtgtaattttttcctgcacgatttatta-tgttgtgcaactaaagagttattcttatcgtgtctgtgcag------

upper sequence: GLYMA13G40780.2 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G166659_T01 (Zea mays), 5'ss of exon 3
TGGTTTTCATTGTTGACTTGCGGGCCGACAAGAAGAAGATCAAGGATGCAGTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagc-cttta-taaagtgatgcttatagaatttg-tttgttgattcattattgctattttctaatgacaatggtatgcttgcagtgaatttgatattgcag
|||| || ||||||||| |   ||| |||||||| |||||||||| ||| ||||||||||||||||| ||||| || ||||| || |||||| ||||||||| ||| ||||  |  |||| |  || | |    |  ||||||  ||  |    || | |   | ||       || | | |||||                 
TGGTCTTTATTGTTGACCTCAAGGCAGACAAGAAAAAGATCAAGGCTGCGGTCAAGAAGATGTATGACATTCAAGCAAAGAAGGTCAACACCCTGATCAGgttagcgctttgctccagtgttattttttgtgcataatttgttattttgt----gcaactgagtgattcttgatgtgtccatgcag-----------------

upper sequence: GLYMA13G40780.2 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G172153_T01 (Zea mays), 5'ss of exon 11
---TGGTTTTCATTGTTGACTTGCGGGCCGACAAGAAGAAGATCAAGGATGCAGTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagcctttataaagtgatgcttatagaatttgtttgttgattcattattgctattttctaatgacaatggtatgcttgcagtgaatttgatattgcag
   |||| |||||||| ||| |   ||| ||||||||||||||||||| ||| | |||||   ||||||| |||||||||||||| || |||||| |||||| || ||| |||         || |      ||||  ||||  ||    ||||  | || |  |||    |    || |||  | ||  | ||    | |||
CTCTGGTCTTCATTGTCGACCTCAAGGCAGACAAGAAGAAGATCAAGGCTGCTGCCAAGA---TGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAAgttagcatttg--gtccagtgtt------attttcttgtgcataatctatta-tgttgtgcaattgtgagttaattctta-actgtgtctg----tccag

upper sequence: GLYMA13G40780.2 (Glycine max), 5'ss of exon 2
lower sequence: AT3G55280.1 (Arabidopsis thaliana), 5'ss of exon 3
TGGTTTTCATTGTTGACTTGCGGGCCGACAAGAAGAAGATCAAGGATGCAGTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagcctttataaagtgatgcttatagaatttgtttgttgattcattattgctattttctaatgacaatggtatgcttgcagtgaatttgatattgcag
| || |||||||||||| | || || |||||||| |||||||| ||||| ||||||||||||||||| |||||| |||||||||| |||||| | || |||| | |  |   |||      || | |         | | | || |    ||  |   |  | |||  |  ||||| ||| |   |              
TAGTCTTCATTGTTGACATCCGTGCTGACAAGAAAAAGATCAAAGATGCTGTCAAGAAGATGTATGACATTCAGACCAAGAAAGTCAACACCCTCATTAGgtaaacact---aaaacttcactgaga---------tatgggttta----tgtaaacatggagtgatgagtgtatgtttgtatgcag-------------

upper sequence: GLYMA13G40780.2 (Glycine max), 5'ss of exon 2
lower sequence: AT2G39460.1 (Arabidopsis thaliana), 5'ss of exon 2
TGGTTTTCATTGTTGACTTGCGGGCCGACAAGAAGAAGATCAAGGATGCAGTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagcctttataaagtgatgct-tatagaatttgtttgtt-gattcattat-tgctattttctaatgacaatggtatgcttgcagtgaatttgatattgcag
| ||||||||||||||| | || || |||||||||||||| |||||||| || |||||||||||||| || ||| |||||||||| |||||  | |||||||    ||||| | |||  |  | |||  |   |  ||||  |||| ||||| | | || |  |    || ||||| || ||    |  |             
TTGTTTTCATTGTTGACATTCGTGCTGACAAGAAGAAGATTAAGGATGCTGTTAAGAAGATGTATGACATCCAGACCAAGAAAGTGAACACACTCATCAGgta---ctttaaagagtatttttctatgaagccttgttgtgagattgattatgttcaatatatttgacactatggtttggttttgttacag------------

upper sequence: GLYMA13G40780.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv13s0019g00250.t01 (Vitis vinifera), 5'ss of exon 3
TGGTTTTCATTGTTGACTTGCGGGCCGACAAGAAGAAGATCAAGGATGCAGTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagcctttataaagtgatgc---ttatagaat---ttgtttgttgattcattattgctattttctaatgacaatggtatgcttgcagtgaatttgatattgcag
||||||||||||||||| | || || |||||||| |||||||| |||||||| ||||||||||| || |||||| |||||||||| ||||| |||||||||| |   |  || || | |  |   | | |  ||   |||||| | | |     |  |  | ||  |  | |||             | | ||    |||      
TGGTTTTCATTGTTGACATCCGTGCTGACAAGAAAAAGATCAAAGATGCAGTGAAGAAGATGTACGAAATTCAGACCAAGAAAGTTAACACTTTGATCAGgt-aatttccattaattcactcacttaacaacatgcattgtttttgggtagggaaaggaaaattcttctttacaccaaggctagatgattaaaagaaataa-----

upper sequence: GLYMA13G40780.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv06s0004g04090.t01 (Vitis vinifera), 5'ss of exon 3
TGGTTTTCATTGTTGACTTGCGGGCCGACAAGAAGAAGATCAAGGATGCAGTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtg--agcctttataaagtgatgcttatagaatttgtttgttgattcattattgctattttctaat-gacaatggtatgcttgcagtgaatttgatattgcag
||||||||||||||||| | || ||| ||||||||||||| |||||||| || || |||||||||||||||||| |||||||||| || ||| |||||||||   |   ||| ||     ||  |  |     || |   |   |  |     | ||||   || | || || | |||        | ||  | | |||    
TGGTTTTCATTGTTGACATTCGTGCCAACAAGAAGAAGATAAAGGATGCTGTTAAAAAGATGTATGATATTCAGACCAAGAAAGTGAATACCCTGATCAGgtatcaatatttttattccaattatattttttattatccctgagtatacagcagttattggatagtcgataaagatatcagacttttcaaagttagattc---

upper sequence: GLYMA13G40780.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv08s0040g02630.t01 (Vitis vinifera), 5'ss of exon 2
TGGTTTTCATTGTTGACTTGCGGGCCGACAAGAAGAAGATCAAGGATGCAGTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtga-gcctttataaagtgatgcttatagaatttgtttgttgattcattattgctattttct-aatgacaatggtatgcttgcagtgaatttgatattgcag
| || |||||||||||| | || || ||||| |||||||| ||||||||| | ||||| |||||||| |||||| |||||||||| || ||||||||||||| | | ||| ||   |       |    | ||   |||   | | |||     | |||| | | |  |||   |     ||      ||||  | |||   
TTGTCTTCATTGTTGACATCCGTGCTGACAAAAAGAAGATAAAGGATGCAATGAAGAAAATGTATGACATTCAGACCAAGAAAGTGAATACCTTGATCAGgtaaagacttcattttgaatcttctcagcagttcaattg--aaattattggcatttttttttcagttgcaacaattcatatgattatcattttttgttggca

upper sequence: GLYMA13G40780.2 (Glycine max), 5'ss of exon 2
lower sequence: PP1S459_11V6.1 (Physcomitrella patens), 5'ss of exon 1
TGGTTTTCATTGTTGACTTGCGGGCCGACAAGAAGAAGATCAAGGATGCAGTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagc---ctttataaagtgatgcttatagaatttgt-ttgttgattcattattgctattttctaatgacaatggtatgcttgcagtgaatttgatattgcag
|||||||||| || ||  |||| |||||||||||||||||||| || || |||||||||||||| || |||||| ||||||| || || || ||||||||||||      |||   | |   |  || | |         | | |  |        ||   || |    |    |   || |||    |     ||| ||    
TGGTTTTCATCGTGGATGTGCGCGCCGACAAGAAGAAGATCAAAGAGGCCGTCAAGAAGATGTACGACATTCAGACCAAGAAGGTCAATACTTTGATCAGgtgattatgttttcccatgctttatttctcggggcaacactctagggtttgggaaactgggtttttgcaattgcgtcgtg-ttgtgtagctccagattttc---

upper sequence: GLYMA13G40780.2 (Glycine max), 5'ss of exon 2
lower sequence: PP1S47_274V6.1 (Physcomitrella patens), 5'ss of exon 1
TGGTTTTCATTGTTGACTTGCGGGCCGACAAGAAGAAGATCAAGGATGCAGTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgag------cctttataaagtgatgcttatagaatttgtttgttgattcattattgctattttctaatgacaatg--gtatgcttgcagtgaatttgatattgcag
|||| ||||| || ||| |||| || |||||||||||||||||| | || || ||||| ||||| || || ||| ||||||| || ||||| ||||||||||||       ||| | |   | |||     | ||| |   ||   | ||    | || | | | ||  | |  | |  |  ||| ||          |         
TGGTGTTCATCGTGGACGTGCGTGCGGACAAGAAGAAGATCAAGCAGGCTGTGAAGAAAATGTACGACATCCAGACCAAGAAGGTCAACACATTGATCAGgtgattgtcctcctctctgttgggatttccttcgaagtgccttagggttttcgaactgttgtctccttgtaattacgtcgggtgcctgtttcagtcccgg--------

upper sequence: GLYMA13G40780.2 (Glycine max), 5'ss of exon 2
lower sequence: PP1S146_96V6.1 (Physcomitrella patens), 5'ss of exon 1
TGGTTTTCATTGTTGACTTGCGGGCCGACAAGAAGAAGATCAAGGATGCAGTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagcctttataaagtgatgcttatagaatttgtttgttgattcattattgctattt---tctaatgacaatggtatgcttgcagtgaatttgatattgcag
||||||||||||||||  ||||||| |||||||||||||||||||| || ||||||||||||||||| || ||| ||||||| || ||||| |||||||||| |  | ||||       |  || |    |      ||   ||     |     |||   |||  |  | || | ||   |   || | |   | || |   
TGGTTTTCATTGTTGATGTGCGGGCTGACAAGAAGAAGATCAAGGAGGCTGTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAGgt-actcattatcccccctttgttgttatgtcctccagtgcgttagggttaagcgtttcagtctcttcgcgattgaattgatat-gttattcccacatgggt-

upper sequence: GLYMA13G40780.2 (Glycine max), 5'ss of exon 2
lower sequence: PP1S46_72V6.1 (Physcomitrella patens), 5'ss of exon 1
TGGTTTTCATTGTTGACTTGCGGGCCGACAAGAAGAAGATCAAGGATGCAGTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagcctttataaagtgatgcttatagaatttgtttgttgattcattattgctattttctaatgacaatggtatgcttgcagtgaatttgatattgcag-
|||| |||||||| ||| |||| || |||||||||||||||||||| || |||||||| ||||| || |||||  ||||||| || ||||| ||||||||||     ||| |    |    | | |    ||| ||  |  ||      ||| |  ||| |  |  |   |||     |   ||       | |||||   
TGGTCTTCATTGTGGACGTGCGCGCTGACAAGAAGAAGATCAAGGAGGCTGTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgtttctctcctctcccctttttccttttttaatgaatcagggtttgttgattttttgtttcttcggtggtggtctcgtttgcgcaa-attgcgtg

upper sequence: GLYMA13G40780.2 (Glycine max), 5'ss of exon 2
lower sequence: EFJ09823 (Selaginella moellendorffii), 5'ss of exon 2
TGGTTTTCATTGTTGACTTGCGGGCCGACAAGAAGAAGATCAAGGATGCAGTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagcctttataaagt--------gatgcttatagaatttgtttgtt-gattcattattgctattttctaatgacaat-----ggtatgcttgc---agtgaattt-gatattgcag--------------------------------------------------
|||| ||||| || ||| | |||||||||||||||||||||||| | || || |||| |||||| ||||| ||| ||||||| || |||||  ||||||||| | | ||  |    |        | || |  |  | | ||| | || |||||| |  | |   | |    | || ||     |||  | |||    | ||| ||| |   || |||                                                  
TGGTCTTCATCGTCGACATCCGGGCCGACAAGAAGAAGATCAAGAACGCCGTGAAGATGATGTACGATATCCAGACCAAGAAGGTGAACACGCTGATCAGgtaatctttctttctttctttcctcggtggtagtctagtgtgtcttttcgattcacttcttcgtgtgtgggcttaccatttcttggttcgtttgtctgattgatttttggctttccagcttctcattgttttcattcatgggcttaccactttcgtttttttttccag

upper sequence: GLYMA13G40780.2 (Glycine max), 5'ss of exon 2
lower sequence: EFJ15194 (Selaginella moellendorffii), 5'ss of exon 2
TGGTTTTCATTGTTGACTTGCGGGCCGACAAGAAGAAGATCAAGGATGCAGTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagcctttataaagt--------gatgcttatagaatttgtttgtt-gattcattattgctattttctaatgacaat-----ggtatgcttgc---agtgaatttgatattgcag-------------------------------------------------
|||| ||||| || ||| | |||||||||||||||||||||||| | || || |||| |||||| ||||| ||| ||||||| || |||||  ||||||||| | | ||  |    |        | || |  |    ||||| | ||  ||||| |  | |   | |    | ||  |     |||    |||    | ||| ||||   ||  ||                                                 
TGGTCTTCATCGTCGACATCCGGGCCGACAAGAAGAAGATCAAGAACGCCGTGAAGATGATGTACGATATCCAGACCAAGAAGGTGAACACGCTGATCAGgtaatctttctttctttctttcctcggtggtagtctcgtttgtcttttcaattcacttcttcgtgtgtgggcttaccgtttcttggttcttttgtctgattgattttggctttctagcttctcattgttttcattcatgggcttaccactttcttcttttttccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298179404|gb|HO027875.1|HO027875
EST:     GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
EST: gi|192333698|gb|FK025463.1|FK025463
EST:     GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
EST: gi|38193232|gb|CF922438.1|CF922438
EST:     GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
EST: gi|213611065|gb|DB970992.1|DB970992
EST:     GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
EST: gi|214009761|gb|DB987961.1|DB987961
EST:     GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
EST: gi|8402069|gb|BE057703.1|BE057703
EST:     GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
EST: gi|6951766|gb|AW423834.1|AW423834
EST:     GTCAAGAAGATGTATGATATTCATGCCAAGAAAGTGAACACCTTGATCAG                         GCCTGATGGAACCAAGAAAGGC-TATGTCAGGTTGACACCTGATTATGACG
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAA-GGCCTATGTCAGGTTGACACCTGATTATGACG
EST: gi|6747734|gb|AW318190.1|AW318190
EST:     GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
EST: gi|151394626|gb|EV264497.1|EV264497
EST:     GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
EST: gi|6666174|gb|AW277633.1|AW277633
EST:     GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
EST: gi|7639320|gb|AW733645.1|AW733645
EST:     GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
EST: gi|193348870|gb|FK315216.1|FK315216
EST:     GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
EST: gi|6913503|gb|AW395033.1|AW395033
EST:     GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
EST: gi|51337227|gb|CO981093.1|CO981093
EST:     GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
EST: gi|8285163|gb|BE022722.1|BE022722
EST:     GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAG                         GCCTGATGGAACCAAGAAAGCCTATGTCAGGTTGACACCTGATTATGACGC
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
EST: gi|8286339|gb|BE023898.1|BE023898
EST:     GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
EST: gi|192315065|gb|FK010435.1|FK010435
EST:     GTCAAGAAGATGTATGAT-T-CAGGCCAAGAAAGTAAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
EST: gi|31561020|gb|CD486858.1|CD486858
EST:     GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCCTGATTATGACG
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACC-TGATTATGACG
EST: gi|13181470|gb|BG352810.1|BG352810
EST:     GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
EST: gi|192333713|gb|FK025464.1|FK025464
EST:     GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
EST: gi|10254581|gb|BE822347.1|BE822347
EST:     GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
EST: gi|192317448|gb|FK011266.1|FK011266
EST:     GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
EST: gi|38193398|gb|CF922604.1|CF922604
EST:     GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
EST: gi|192311405|gb|FK003498.1|FK003498
EST:     GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
EST: gi|31305688|gb|CD390891.1|CD390891
EST:     GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATCCCCACGC
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
EST: gi|192301644|gb|FG997600.1|FG997600
EST:     GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
EST: gi|5753483|gb|AI960770.1|AI960770
EST:     GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
EST: gi|15814025|gb|BI786300.1|BI786300
EST:     GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
EST: gi|192316257|gb|FK011644.1|FK011644
EST:     GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGGCGC
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
EST: gi|38192506|gb|CF921712.1|CF921712
EST:     GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
EST: gi|192317447|gb|FK011265.1|FK011265
EST:     GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
EST: gi|192301545|gb|FG994113.1|FG994113
EST:     GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
EST: gi|213620120|gb|DB965412.1|DB965412
EST:     GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
EST: gi|192300561|gb|FG991513.1|FG991513
EST:     GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
EST: gi|192315066|gb|FK010436.1|FK010436
EST:     GTCAAGAAGATGTATGAT-T-CAGGCCAAGAAAGTAAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
EST: gi|20812652|gb|BQ297130.1|BQ297130
EST:     GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
EST: gi|192316256|gb|FK011643.1|FK011643
EST:     GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGGCGC
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
EST: gi|192311404|gb|FK003497.1|FK003497
EST:     GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
EST: gi|57575683|gb|CX548658.1|CX548658
EST:     GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
EST: gi|8826760|gb|BE210490.1|BE210490
EST:     GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
EST: gi|151398829|gb|EV268700.1|EV268700
EST:     GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAG                         GCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC
genomic: GTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagccttt ... tctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGGTTTTCATTGTTGACTTGCGGGCCGACAAGAAGAAGATCAAGGATGCAGTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagcctttataaagtgatgcttatagaatttgtttgttgattcattattgctattttctaatgacaatggtatgcttgcagtgaatttgatattgcag

- - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA