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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGTTGTCTGTGGGGTATTCTTTGGATCAAATACCAAACGATATAACGAAGAAGACACCGGCTAGTTTTGAGCCCTCTATTGATTATGTGGTTACTAAGgtatgcaacttagttgttgatgatattgctatgatataccaatgtgacttggtaggatggttttaattttaaattgtaaattttgtatagttggtaagtc...

Basic information

species Glycine max
transcript GLYMA13G40380.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G40380.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os01g38970.1 (Oryza sativa), 5'ss of exon 1
GAAGTTGTCTGTGGGGTATTCTTTGGATCAAATACCAAACGATATAACGAAGAAGACACCGGCTAGTTTTGAGCCCTCTATTGATTATGTGGTTACTAAGgtatgcaacttagtt--gttgatgatattgctatgatataccaatgtgacttggtaggatg-gttttaattttaaattgtaaattttgtatagttggtaagtc--
 ||| | ||||| || ||| ||||||| || || ||||| ||||| ||||||||||| || ||||| |||||||| || ||||| || ||||| |||||||| |||   ||   |  |||  | | ||| ||  |      |||||  | |||||    || |   |  ||  |  ||  |   ||  | |||  | ||  |   
AAAGCTCTCTGTAGGTTATACTTTGGACCAGATTCCAAATGATATTACGAAGAAGACTCCTGCTAGCTTTGAGCCTTCCATTGACTACGTGGTCACTAAGgtttgctttttccctctgtttctaagatttcttggg-----caatgatatttggtgcactgtgcaattgttgcatttttcatccttattttagaagctatcttgc

upper sequence: GLYMA13G40380.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G700683_T01 (Zea mays), 5'ss of exon 1
GAAGTTGTCTGTGGGGTATTCTTTGGATCAAATACCAAACGATATAACGAAGAAGACACCGGCTAGTTTTGAGCCCTCTATTGATTATGTGGTTACTAAGgtatgcaacttagttgttgatgatattgctatgatataccaatgtgactt-----ggtaggatggttttaattttaaattgtaaattttgtatagttggtaagtc
|||| | || || || ||  || | ||||| || || || ||||| || |||||||| || ||||| || ||||| || ||||||||||||||||| |||||||    |  |  |||   | |  || ||    | |   ||||    ||     |  |  |||  | |    |  |  | ||| || | |||| |   |     
GAAGCTCTCAGTAGGCTACACTCTAGATCAGATTCCCAATGATATTACCAAGAAGACTCCAGCTAGCTTCGAGCCTTCCATTGATTATGTGGTTACAAAGgtattattccaatctgtctcttagctttcttaattgtgtgaatgaagtttttcctgcaaatatgcatctgcagtacatatttaacttctctatattcctt-----

upper sequence: GLYMA13G40380.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G29900.1 (Arabidopsis thaliana), 5'ss of exon 1
GAAGTTGTCTGTGGGGTATTCTTTGGATCAAATACCAAACGATATAACGAAGAAGACACCGGCTAGTTTTGAGCCCTCTATTGATTATGTGGTTACTAAGgtatgcaacttagt--tgttgatgatatt---gctatgatatacca---atgtgacttggtaggatggttttaattt-taaattgtaaattttgtatagttg---gtaagtc---------------------------------
 ||||||||||| || ||| | |||||||| || || || ||||| |||| ||| ||||||||||| || |||||||| || ||||||||||| |||||||| ||  | |   |  | |||    ||||   | |  || ||   |      |||||| | ||  |       || | |  | |  |   | | || | |     | |  |                                  
CAAGTTGTCTGTTGGCTATACCTTGGATCAGATTCCTAATGATATCACGAGGAAAACACCGGCTAGCTTCGAGCCCTCCATCGATTATGTGGTGACTAAGgtttgtcattccatacttttggctttatttgtgttgcgaaatgagatacgcttgactttgaagatttacacacatctatccacttcatgatatataaactcaaatgcatattttgcttaacgatatctatttctttaccatgcag

upper sequence: GLYMA13G40380.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv06s0004g03360.t01 (Vitis vinifera), 5'ss of exon 1
GAAGTTGTCTGTGGGGTATTCTTTGGATCAAATACCAAACGATATAACGAAGAAGACACCGGCTAGTTTTGAGCCCTCTATTGATTATGTGGTTACTAAGgtatgcaacttagttg--ttgatgatattgctatgatataccaatgtgacttggtaggatggttttaattttaaattgtaaat---tttgtatagttggtaagtc-
      ||| || || || || |||||||| || ||||| || || || ||||| |||||||||||||||||||| || || ||||||||||| || |||| | |   |||  |    |  ||  || |  |    ||| | |||||  ||| ||    || | |    |||    | | |||   ||  | |  | | |      
------GTCGGTTGGTTACTCATTGGATCAGATTCCAAATGACATCACAAAGAAAACACCGGCTAGTTTTGAGCCTTCCATAGATTATGTGGTGACAAAGGCAAGTgtctttctccattctattgtactagttatttatgctaatgtttctttgttaattgttgtagtatttggcatttgaatattttcatgtcatcgatgttcta

upper sequence: GLYMA13G40380.1 (Glycine max), 5'ss of exon 2
lower sequence: PP1S43_32V6.1 (Physcomitrella patens), 5'ss of exon 4
GAAGTTGTCTGTGGGGTATTCTTTGGATCAAATACCAAACGATATAACGAAGAAGACACCGGCTAGTTTTGAGCCCTCTATTGATTATGTGGTTACTAAGgtatgcaacttagttgttgatgatattgctatgatataccaatgtgacttggtaggatggttttaattttaaattgtaaattttgtatagttggtaagtc----------------------------------------
 ||  | || || || ||  | ||||||||||| ||||| ||||| || ||||| || || ||||||||||||||||| ||||| || || ||||||||||  |||| | |  |     |    | | ||||| | |    | |   |||||||       | || ||  |||      ||| ||   |  ||| |||                                          
AAAACTTTCAGTCGGATACACATTGGATCAAATTCCAAATGATATCACCAAGAAAACTCCAGCTAGTTTTGAGCCCTCCATTGACTACGTTGTTACTAAGg--tgcagccttctcccccaaataagttctatgctttgt--aggattcttggtatttctcatgtatttaaaaacgagttattatgatgaaatgggaagatagactcatcgcgttttgtgtccgtctttggagtggtacag