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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAACCTGGTCTCCACCGAATACCCATTCTGGAACCGCAGCAGAGGATCCGACCACGTCTTCGTCGCTTCCCACGACTTCGGCGCGTGCTTTCACACTCTGgtaaaaaatctaagccccaaatcgtttaaaaggtagtgtctcataagtgttcataatataaggcttagtatttctaacgtatcgttattgtttcatgaag

Basic information

species Glycine max
transcript GLYMA13G39700.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G39700.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os03g01760.2 (Oryza sativa), 5'ss of exon 1
CAACCTGGTCTCCACCGAATACCCATTCTGGAACCGCAGCAGAGGATCCGACCACGTCTTCGTCGCTTCCCACGACTTCGGCGCGTGCTTTCACACTCTGgtaaaaaatctaagccccaaatcgtttaaaaggta-gtgtctcataag-tgttcataatataaggcttagtatttctaacgtatcgttattgtttcatgaag---
| |||| |||    || |    || | ||||||||||  |   ||  | |||||||| |||||||| || |||||||||||||| ||||| ||  |  |||| |    |   | | |     |  |      ||  | ||         |  | |  | || | || |  |||||||   |  | || |  | | || |  |   
CGACCTCGTCCGGGCCCAGATGCCCTACTGGAACCGCTCCGCCGGCGCGGACCACGTGTTCGTCGCGTCGCACGACTTCGGCGCCTGCTTCCATCCCATGgtcagc--ttcgatctcttctccactggttgcgtctgcgttaggcggactacttactagatgatgcatgatatttcttgagc-ttgtaa--gatgcaagttgctt

upper sequence: GLYMA13G39700.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G113245_T01 (Zea mays), 5'ss of exon 1
CAACCTGGTCTCCACCGAATACCCATTCTGGAACCGCAGCAGAGGATCCGACCACGTCTTCGTCGCTTCCCACGACTTCGGCGCGTGCTTTCACACTCTGgtaaaaaatctaagccccaaatcgtttaaaaggtagtgtctcataagtgttcataatataaggcttagtatttctaacgtatcgttatt-gtttcatgaag-
| |||| |||    |||     || |  ||||| |||  |   ||  ||||||||||||||||||| ||||||||||||||||| ||||| ||  |  |||| |         ||   ||       |     |   | ||||    |  |     |    || |  ||  | ||  || | |   ||   || | || |  
CGACCTCGTCCAGGCCGGGATGCCGTATTGGAATCGCTCCGCCGGGGCCGACCACGTCTTCGTCGCCTCCCACGACTTCGGCGCCTGCTTCCATCCCATGgtgagcgtgtccggcgaaaagctcccgactttttctgggctca--gtttgttgcggtgggtggttgcgtcctgcttgcgcacctaaatccattgcgtgtaaa

upper sequence: GLYMA13G39700.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G035377_T01 (Zea mays), 5'ss of exon 1
CAACCTGGTCTCCACCGAATACCCATTCTGGAACCGCAGCAGAGGATCCGACCACGTCTTCGTCGCTTCCCACGACTTCGGCGCGTGCTTTCACACTCTGgtaaaaaatctaagccccaaatcgtttaaaaggtagtgtctcataagtgttcataatataaggcttagtatttctaacgtatcgttat---tgtttcatgaag-
| |||| |||    ||      || | ||||||||||  |   ||  ||||||| ||||||||||| ||||||||||||||||| ||||| ||  |  |||| |     |   ||   ||           ||    || |  |  ||| |  |        || ||  || ||   |||     ||      || || | |  
CGACCTCGTCCGGGCCCGGATGCCGTACTGGAACCGCTCCGCCGGGGCCGACCATGTCTTCGTCGCGTCCCACGACTTCGGCGCCTGCTTCCATCCCATGgtgagcgtgccccgcgaaaatctccgactttggctccgtttgttgcgtgctgctcgcgc---gcctaa-atctcctgcgtgcaaatacgaaaattgcaagtaac