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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTAGTTAGAGCTGCACATAAACAGGGTGCGAACATCATTCTTATTCAGgtgtgcatatttaaaaccttggacgcccttccctgccaatgcttcccacttgtgttacatatcaattatagaatatcttattccatacaatcttttgttg...

Basic information

species Glycine max
transcript GLYMA13G39210.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14125523|gb|BG789961.1|BG789961
EST:     GCTAGTTAGAGCTGCACATAAACAGGGTGCGAACATCATTCTTATTCAG                         GAACTCTTTGAAGGTTATTACTTCTGTCAGGCACAGAGAGAGGAGTTCATT
genomic: GCTAGTTAGAGCTGCACATAAACAGGGTGCGAACATCATTCTTATTCAGgtgtgcatat ... ctaatttcagGAACTCTTTGAAGGTTATTACTTCTGTCAGGCACAGAGAGAGGAGTTCATT
EST: gi|15199519|gb|BI423872.1|BI423872
EST:     GCTAGTTAGAGCTGCACATAAACAGGGTGCGAACATCATTCTTATTCAG                         GAACTCTTTGAAGGTTATTACTTCTGTCAGGCACAGAGAGAGGAGTTCATT
genomic: GCTAGTTAGAGCTGCACATAAACAGGGTGCGAACATCATTCTTATTCAGgtgtgcatat ... ctaatttcagGAACTCTTTGAAGGTTATTACTTCTGTCAGGCACAGAGAGAGGAGTTCATT
EST: gi|209726298|gb|BW659611.1|BW659611
EST:     GCTAGTTAGAGCTGCACATAAACAGGGTGCGAACATCATTCTTATTCAG                         GAACTCTTTGAAGGTTATTACTTCTGTCAGGCACAGAGAGAGGAGTTCATT
genomic: GCTAGTTAGAGCTGCACATAAACAGGGTGCGAACATCATTCTTATTCAGgtgtgcatat ... ctaatttcagGAACTCTTTGAAGGTTATTACTTCTGTCAGGCACAGAGAGAGGAGTTCATT
EST: gi|7924791|gb|AW830817.1|AW830817
EST:     GCTAGTTAGAGCTGCACATAAACAGGGTGCGAACATCATTCTTATTCAG                         GAACTCTTTGAAGGTTATTACTTCTGTCAGGCACAGAGAGAGGAGTTCATT
genomic: GCTAGTTAGAGCTGCACATAAACAGGGTGCGAACATCATTCTTATTCAGgtgtgcatat ... ctaatttcagGAACTCTTTGAAGGTTATTACTTCTGTCAGGCACAGAGAGAGGAGTTCATT
EST: gi|298172516|gb|HO019556.1|HO019556
EST:     GCTAGTTAGAGCTGCACATAAACAGGGTGCGAACATCATTCTTATTCAG                         GAACTCTTTGAAGGTTATTACTTCTGTCAGGCACAGAGAGAGGAGTTCATT
genomic: GCTAGTTAGAGCTGCACATAAACAGGGTGCGAACATCATTCTTATTCAGgtgtgcatat ... ctaatttcagGAACTCTTTGAAGGTTATTACTTCTGTCAGGCACAGAGAGAGGAGTTCATT
EST: gi|298165233|gb|HO011282.1|HO011282
EST:     GCTAGTTAGGGCTGCACATAAACAGGGTGCGAACATCATTCTTATTCAG                         GAGCTCTTTGAAGGTTATTACTTCTGTCAGGCACAGAGAGAGGAGTTCATT
genomic: GCTAGTTAGAGCTGCACATAAACAGGGTGCGAACATCATTCTTATTCAGgtgtgcatat ... ctaatttcagGAACTCTTTGAAGGTTATTACTTCTGTCAGGCACAGAGAGAGGAGTTCATT
EST: gi|19935096|gb|BQ080126.1|BQ080126
EST:     GCTAGTTAGAGCTGCACATAAACAGGGTGCGAACATCATTCTTATTCAG                         GAACTCTTTGAAGGTTATTACTTCTGTCAGGCACAGAGAGAGGAGTTCATT
genomic: GCTAGTTAGAGCTGCACATAAACAGGGTGCGAACATCATTCTTATTCAGgtgtgcatat ... ctaatttcagGAACTCTTTGAAGGTTATTACTTCTGTCAGGCACAGAGAGAGGAGTTCATT
EST: gi|209726043|gb|BW672766.1|BW672766
EST:     GCTAGTTAGAGCTGCACATAAACAGGGTGCGAACATCATTCTTATTCAG                         GAACTCTTTGAAGGTTATTACTTCTGTCAGGCACAGAGAGAGGAGTTCATT
genomic: GCTAGTTAGAGCTGCACATAAACAGGGTGCGAACATCATTCTTATTCAGgtgtgcatat ... ctaatttcagGAACTCTTTGAAGGTTATTACTTCTGTCAGGCACAGAGAGAGGAGTTCATT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTAGTTAGAGCTGCACATAAACAGGGTGCGAACATCATTCTTATTCAGgtgtgcatatttaaaaccttggacgcccttccctgccaatgcttcccacttgtgttacatatcaattatagaatatcttattccatacaatcttttgttg

- - -  AGAGCT
- - - -  AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccttccc