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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACGTGTTGAAGAAAATCAGGCTCGCGCGGCAGACTGAGCGATGCAGAAGATCTGCTCATCAAGAGgtaggttttaggtttcttcaatttcttgcttgttcatttgcttcgtgctctgtgatttgaccgttgtggactgtttcgggaattgtag

Basic information

species Glycine max
transcript GLYMA13G38980.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G38980.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os05g36960.1 (Oryza sativa), 5'ss of exon 2
GTACGTGTTGAAGAAAATCAGGCTCGCGCGGCAGACTGAGCGATGCAGAAGATCTGCTCATCAAGAGgtaggttt----------taggtttcttcaatttct------tgcttgttcatttgcttcgt-gctctgtgatttgaccgttgtggactgtttcgg-gaattgtag
||| ||||||||||||||| |||| ||| ||||||| ||||| ||| | |  |||||||| ||||||||  ||            | |     | ||||  ||      || ||||||  ||| ||  | |   | | ||| |    |||   ||         |||||| ||
GTATGTGTTGAAGAAAATCCGGCTTGCGAGGCAGACAGAGCGTTGCCGCAAGTCTGCTCACCAAGAGgttagtggaatgtggaagtggaagcttgcaatccctaggctttgtttgttcggttgtttgctagtggtattattaggaatttgatcacgacgaaaacgaattgcag

upper sequence: GLYMA13G38980.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ20709 (Selaginella moellendorffii), 5'ss of exon 2
GTACGTGTTGAAGAAAATCAGGCTCGCGCGGCAGACTGAGCGATGCAGAAGATCTGCTCATCAAGAGgtaggttttaggtttcttcaatttcttgcttgttcatttgcttcgtgctctgtgatttgaccgttgtggactgtttcgggaattgtag
 || |||||||||||||||||||| ||||| ||||||||  | ||||| |||||||||||||||||||||      | |  | |||  ||||| | ||  |     |   |    | ||||   | |   | |  |                   
ATATGTGTTGAAGAAAATCAGGCTTGCGCGACAGACTGATAGGTGCAGGAGATCTGCTCATCAAGAGgta------aagccttttcc-tttctggattcctttcacgagacagaatttgtg---taaatttcgaag-------------------