1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CATAATTTAGCTCTTTTTCTCCGCCCACAATGGGTAAAGCTAAAAAGGGACCAAAGTTTGCTGTTATGAAGAAGATTGTCACTTCCAAAGCAATCAAAAGgtgagtatttttcttcttcttttcaattcctaaaatttggttcttttattatgcttggttttgctctaatttcattccttgaaatcctgtcgaattcag
species | Glycine max |
transcript | GLYMA13G38690.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CCAAAGTTTGCTGTTATGAAGAAGATTGTCACTTCCAAAGCAATCAAAAG CTACAAAGAAGAGGTTTTGAACCCAGAAAAGAAGAATCTTATGAAGGAAAAEST: gi|14125427|gb|BG789865.1|BG789865
genomic: CCAAAGTTTGCTGTTATGAAGAAGATTGTCACTTCCAAAGCAATCAAAAGgtgagtattt ... tcgaattcagCTACAAAGAAGAGGTTTTGAACCCAGAAAAGAAGAATCTTATGAAGGAAAA
EST: ATGAAGAAGATTGTCACTTCCAAAGCAATCAAAAG CTACAAAGAAGAGGTTTTGAACCCAGAAAAGAAGAATCTTATGAAGGAAAAEST: gi|21602514|gb|BQ612845.1|BQ612845
genomic: ATGAAGAAGATTGTCACTTCCAAAGCAATCAAAAGgtgagtattt ... tcgaattcagCTACAAAGAAGAGGTTTTGAACCCAGAAAAGAAGAATCTTATGAAGGAAAA
EST: CCAAAGTTTGCTGTTATGAAGAAGATTGTCACTTCCAAAGCAATCAAAAG CTACAAAGAAGAGGTTTTGAACCCAGAAAAGAAGAATCTTATGAAGGAAAA
genomic: CCAAAGTTTGCTGTTATGAAGAAGATTGTCACTTCCAAAGCAATCAAAAGgtgagtattt ... tcgaattcagCTACAAAGAAGAGGTTTTGAACCCAGAAAAGAAGAATCTTATGAAGGAAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATAATTTAGCTCTTTTTCTCCGCCCACAATGGGTAAAGCTAAAAAGGGACCAAAGTTTGCTGTTATGAAGAAGATTGTCACTTCCAAAGCAATCAAAAGgtgagtatttttcttcttcttttcaattcctaaaatttggttcttttattatgcttggttttgctctaatttcattccttgaaatcctgtcgaattcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA