1 5' 3' | 2 5' 3' | 3 5' 3' |
TGCTGGATTTGGATCTAAGAGCAAATATATGTTTGGGAAAGTGACCATCCAGCTCAAGCTTGTGGAGGGTGACTCTGCTGGAACTGTCACTGCTTTCTATgtaagtggaaattttatatttttttttttaagaacaaatttgctcatgatgctcttttgctgttttagtacggagcttatgataattactatttactagc...
species | Glycine max |
transcript | GLYMA13G38040.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CTGCT-GAACTGTCACTGC-TTCTAT ATGTCATCAGAC-GCCCAACTCACAACGAATTTGATTTCGAG-TTTT-GGCEST: gi|192297480|gb|FG989515.1|FG989515
genomic: CTGCTGGAACTGTCACTGCTTTCTATgtaagtggaa ... tgtgatgcagATGTCATCAGACGGCCCAACTCACAACGAATTTGATTTCGAGTTTTTGGGC
EST: AGCTCAAGCTTGTGGAGGGTGACTCTGCTGGAACTGTCACTGCTTTCTAT ATGTCATCAGACGGCCCAACTCACAACGAATTTGATTTCGAGTTTTTGGGCEST: gi|12774802|gb|BG239750.1|BG239750
genomic: AGCTCAAGCTTGTGGAGGGTGACTCTGCTGGAACTGTCACTGCTTTCTATgtaagtggaa ... tgtgatgcagATGTCATCAGACGGCCCAACTCACAACGAATTTGATTTCGAGTTTTTGGGC
EST: GCTTGTGGAGGGTGACTCTGCTGGAACTGGCACTGCTTTCTAT ATGTCATCAGACGGCCCAACTCACAACGAATTTGATTTCGAGTTTTTGGGC
genomic: GCTTGTGGAGGGTGACTCTGCTGGAACTGTCACTGCTTTCTATgtaagtggaa ... tgtgatgcagATGTCATCAGACGGCCCAACTCACAACGAATTTGATTTCGAGTTTTTGGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCTGGATTTGGATCTAAGAGCAAATATATGTTTGGGAAAGTGACCATCCAGCTCAAGCTTGTGGAGGGTGACTCTGCTGGAACTGTCACTGCTTTCTATgtaagtggaaattttatatttttttttttaagaacaaatttgctcatgatgctcttttgctgttttagtacggagcttatgataattactatttactagc
- - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA