Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATGGCCGACGAAGCTGTGGTTGTTCCAGATCCCACCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAGgtaccaatttccatgtttttagggttcagctgcttattaaattatatcctaaaaatctgtgatgtgtattctgttctgatgttttttcgatgtgttcttatgtgaaatgtgtaattattgttgattttttgtttttgttttgtgttattag

Basic information

species Glycine max
transcript GLYMA13G37610.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G37610.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ17708 (Selaginella moellendorffii), 5'ss of exon 1
-----------CTATGGCCGACGAAGCTGTGGTTGTTCCAGATCCCACC---CAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAGgtaccaatttccatgtttttagggttcagctgcttattaaattatatcctaaaaatctgtgatgtgtattctgttctgatgttttttcgatgtgttcttatgtgaaatgtgtaattattgttgattttttgtttttgttttgtgttattag
           |   | ||   || ||||||| |||     | ||| ||        ||||||||||||||| ||  ||||||||| ||| ||||||||||||     | | ||   |  |    | |||||    ||    | ||                                                                                                         
GTTTTCCATGGCGGCGACCACTGAGGCTGTGGCTGTGGAGAAGCCCGCCGCCTCCTCCGATGTCAAGCTCTTCAATTGCTGGAGCTACGAGGATATTGAGgtaagcgct-cgatccatcgatctattagctgtgattttggctctag--------------------------------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298189092|gb|HO037495.1|HO037495
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAG                         ATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAGgtaccaattt ... gtgttattagATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
EST: gi|298197761|gb|HO039300.1|HO039300
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAG                         ATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAGgtaccaattt ... gtgttattagATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
EST: gi|213591768|gb|DB973375.1|DB973375
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAG                         ATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAGgtaccaattt ... gtgttattagATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
EST: gi|192311727|gb|FK004890.1|FK004890
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAG                         ATTACTGACACTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAGgtaccaattt ... gtgttattagATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
EST: gi|193724676|gb|FK656840.1|FK656840
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAG                         ATTACTGACTATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCA
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAGgtaccaattt ... gtgttattagATTACTGAC-ATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCA
EST: gi|192318613|gb|FK006201.1|FK006201
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAG                         ATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAGgtaccaattt ... gtgttattagATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
EST: gi|13251955|gb|BG362858.1|BG362858
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAG                         ATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAGgtaccaattt ... gtgttattagATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
EST: gi|192302059|gb|FG995207.1|FG995207
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAG                         ATTACTGGCATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAGgtaccaattt ... gtgttattagATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
EST: gi|213613503|gb|DB963247.1|DB963247
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAG                         ATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAGgtaccaattt ... gtgttattagATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
EST: gi|21677923|gb|BQ630274.1|BQ630274
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAG                         ATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAGgtaccaattt ... gtgttattagATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
EST: gi|192318612|gb|FK006200.1|FK006200
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAG                         ATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAGgtaccaattt ... gtgttattagATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
EST: gi|193593332|gb|FK548944.1|FK548944
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAG                         ATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAGgtaccaattt ... gtgttattagATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
EST: gi|298168229|gb|HO013492.1|HO013492
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAG                         ATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAGgtaccaattt ... gtgttattagATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
EST: gi|193393001|gb|FK360211.1|FK360211
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAG                         ATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAGgtaccaattt ... gtgttattagATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
EST: gi|298174697|gb|HO014728.1|HO014728
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAG                         ATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAGgtaccaattt ... gtgttattagATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
EST: gi|192316629|gb|FK009342.1|FK009342
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAG                         ATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAACAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAGgtaccaattt ... gtgttattagATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
EST: gi|209705580|gb|BW653058.1|BW653058
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAG                         ATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAGgtaccaattt ... gtgttattagATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
EST: gi|193645570|gb|FK590482.1|FK590482
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAG                         ATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAGgtaccaattt ... gtgttattagATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
EST: gi|209721226|gb|BW665743.1|BW665743
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAG                         ATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAGgtaccaattt ... gtgttattagATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
EST: gi|298195095|gb|HO043623.1|HO043623
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAG                         ATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAGgtaccaattt ... gtgttattagATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
EST: gi|298184337|gb|HO029550.1|HO029550
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAG                         ATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAGgtaccaattt ... gtgttattagATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
EST: gi|193519939|gb|FK472358.1|FK472358
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAG                         ATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCA
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAGgtaccaattt ... gtgttattagATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCA
EST: gi|8402335|gb|BE057969.1|BE057969
EST:     GTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAG                         ATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
genomic: GTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAGgtaccaattt ... gtgttattagATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
EST: gi|298168169|gb|HO013432.1|HO013432
EST:     CCCAGATCGATGTCAAGCTCTTTGACCGCTGGAGCTTCGACGATATTGAG                         ATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAGgtaccaattt ... gtgttattagATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
EST: gi|298181168|gb|HO022607.1|HO022607
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAG                         ATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAGgtaccaattt ... gtgttattagATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
EST: gi|151410162|gb|EV279970.1|EV279970
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAG                         ATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAGgtaccaattt ... gtgttattagATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
EST: gi|20075981|gb|BQ094764.1|BQ094764
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAG                         ATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAGgtaccaattt ... gtgttattagATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
EST: gi|298189388|gb|HO037791.1|HO037791
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAG                         ATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAGgtaccaattt ... gtgttattagATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
EST: gi|208078700|gb|GD878402.1|GD878402
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAG                         ATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAGgtaccaattt ... gtgttattagATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
EST: gi|58017722|gb|CX704464.1|CX704464
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAG                         ATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAGgtaccaattt ... gtgttattagATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
EST: gi|17400615|gb|BM177397.1|BM177397
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAG                         ATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAGgtaccaattt ... gtgttattagATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
EST: gi|192323417|gb|FK015303.1|FK015303
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAG                         ATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAGgtaccaattt ... gtgttattagATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
EST: gi|9259270|gb|BE347478.1|BE347478
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAG                         ATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAGgtaccaattt ... gtgttattagATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
EST: gi|58024410|gb|CX711151.1|CX711151
EST:     NNNAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAG                         ATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAGgtaccaattt ... gtgttattagATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
EST: gi|151411621|gb|EV281432.1|EV281432
EST:     AACCGCTGGAGCTTCGACGATATTGAG                         ATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
genomic: AACCGCTGGAGCTTCGACGATATTGAGgtaccaattt ... gtgttattagATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
EST: gi|58024285|gb|CX711026.1|CX711026
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAG                         ATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAGgtaccaattt ... gtgttattagATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
EST: gi|41145824|gb|CK606035.1|CK606035
EST:     CCCAGACCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAG                         ATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAGgtaccaattt ... gtgttattagATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
EST: gi|298189006|gb|HO035731.1|HO035731
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAG                         ATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAGgtaccaattt ... gtgttattagATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
EST: gi|192331400|gb|FK019901.1|FK019901
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAG                         ATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAGgtaccaattt ... gtgttattagATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
EST: gi|193363245|gb|FK325761.1|FK325761
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAG                         ATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAGgtaccaattt ... gtgttattagATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
EST: gi|6913225|gb|AW394755.1|AW394755
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAG                         ATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAGgtaccaattt ... gtgttattagATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
EST: gi|193554302|gb|FK513431.1|FK513431
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAG                         ATTAACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCA
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAGgtaccaattt ... gtgttattagATTA-CTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCA
EST: gi|192318960|gb|FK009040.1|FK009040
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAG                         ATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAGgtaccaattt ... gtgttattagATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
EST: gi|208108833|gb|GD907545.1|GD907545
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAG                         ATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAGgtaccaattt ... gtgttattagATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
EST: gi|193588781|gb|FK541383.1|FK541383
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAG                         ATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGA
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAGgtaccaattt ... gtgttattagATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGA
EST: gi|192324881|gb|FK016082.1|FK016082
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAG                         ATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAGgtaccaattt ... gtgttattagATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
EST: gi|298180084|gb|HO025299.1|HO025299
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAG                         ATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAGgtaccaattt ... gtgttattagATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
EST: gi|192316235|gb|FK011636.1|FK011636
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAG                         ATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAGgtaccaattt ... gtgttattagATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
EST: gi|20811740|gb|BQ296218.1|BQ296218
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAG                         ATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAGgtaccaattt ... gtgttattagATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
EST: gi|193527984|gb|FK483486.1|FK483486
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAG                         ATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAGgtaccaattt ... gtgttattagATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
EST: gi|58014348|gb|CX701090.1|CX701090
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAG                         ATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAGgtaccaattt ... gtgttattagATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
EST: gi|192298022|gb|FG991302.1|FG991302
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCAGGAGCTTCGACGATATTGAG                         ATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAGgtaccaattt ... gtgttattagATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
EST: gi|21678140|gb|BQ630491.1|BQ630491
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAG                         ATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAGgtaccaattt ... gtgttattagATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
EST: gi|298180083|gb|HO025298.1|HO025298
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAG                         ATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAGgtaccaattt ... gtgttattagATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
EST: gi|151395695|gb|EV265572.1|EV265572
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAG                         ATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAGgtaccaattt ... gtgttattagATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
EST: gi|209700858|gb|BW683088.1|BW683088
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAG                         ATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAGgtaccaattt ... gtgttattagATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
EST: gi|192311728|gb|FK004891.1|FK004891
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAG                         ATTACTGACACTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAGgtaccaattt ... gtgttattagATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
EST: gi|298172295|gb|HO019335.1|HO019335
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAG                         ATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAGgtaccaattt ... gtgttattagATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
EST: gi|208232307|gb|GE029092.1|GE029092
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAG                         ATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAGgtaccaattt ... gtgttattagATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
EST: gi|23732886|gb|BU764620.1|BU764620
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAG                         ATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAGgtaccaattt ... gtgttattagATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
EST: gi|208237416|gb|GE028802.1|GE028802
EST:     CTTCGACGATATTGAG                         ATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
genomic: CTTCGACGATATTGAGgtaccaattt ... gtgttattagATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
EST: gi|298181855|gb|HO026030.1|HO026030
EST:     CCCAGATTGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAG                         ATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAGgtaccaattt ... gtgttattagATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
EST: gi|298166059|gb|HO009030.1|HO009030
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAG                         ATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAGgtaccaattt ... gtgttattagATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
EST: gi|298186440|gb|HO037073.1|HO037073
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAG                         ATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAGgtaccaattt ... gtgttattagATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
EST: gi|213587920|gb|DB971409.1|DB971409
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAG                         ATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAGgtaccaattt ... gtgttattagATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
EST: gi|9203746|gb|BE329970.1|BE329970
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAG                         ATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAGgtaccaattt ... gtgttattagATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
EST: gi|193647013|gb|FK593094.1|FK593094
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAG                         ATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAGgtaccaattt ... gtgttattagATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
EST: gi|298164139|gb|HO013784.1|HO013784
EST:     CCCAGATCGATGTCAAGCTCTTTAACCGCT-GAGCTTCGACGATATTGAG                         ATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC
genomic: CCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAGgtaccaattt ... gtgttattagATTACTGACATTTCTCTGGCTGATTATATCGGAGTGGCGACATCCAAGCAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTATGGCCGACGAAGCTGTGGTTGTTCCAGATCCCACCCAGATCGATGTCAAGCTCTTTAACCGCTGGAGCTTCGACGATATTGAGgtaccaatttccatgtttttagggttcagctgcttattaaattatatcctaaaaatctgtgatgtgtattctgttctgatgttttttcgatgtgttcttatgtgaaatgtgtaattattgttgattttttgtttttgttttgtgttattag

- - - - - - - - - - - - - - - - - - - - - - - -  CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT