1 5' 3' | 2 5' 3' | 3 5' 3' |
GTTGACCGTGATGATTTACCTGATCAAGGGAGTGGTCATTTTTCTGAAACAGTGCAGAAGCTGAAGGCACTGAAGCCAAATATGCTGATAGAAGCCTTAGgtatgcatttgaatatttgtacttcctgaatatttgcatgaacatctagttctatcaaatagcaaacaaccaagtctaatcctgatagatgggcacgtag...
species | Glycine max |
transcript | GLYMA13G37570.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGTGCAGAAGCTGAAGGCACTGAAGCCAAATATGCTGATAGAAGCCTTAG TTCCAGATTTTCGAGGAGATGCTGACTGTGTAGAGAAGGTTGCCAAATCAGEST: gi|120530144|gb|EH258278.1|EH258278
genomic: AGTGCAGAAGCTGAAGGCACTGAAGCCAAATATGCTGATAGAAGCCTTAGgtatgcattt ... attgttacagTTCCAGATTTTCGAGGAGATGCTGACTGTGTAGAGAAGGTTGCCAAATCAG
EST: AGTGCAGAAGCTGAAGGCACTGAAGCCAAATATGCTGATAGAAGCCTTAG TTCCAGATTTTCGAGGAGATGCTGACTGTGTAGAGAAGGTTGCCAAATCAGEST: gi|120530253|gb|EH258387.1|EH258387
genomic: AGTGCAGAAGCTGAAGGCACTGAAGCCAAATATGCTGATAGAAGCCTTAGgtatgcattt ... attgttacagTTCCAGATTTTCGAGGAGATGCTGACTGTGTAGAGAAGGTTGCCAAATCAG
EST: AGTGCAGAAGCTGAAGGCACTGAAGCCAAATATGCTGATAGAAGCCTTAG TTCCAGATTTTCGAGGAGATGCTGACTGTGTAGAGAAGGTTGCCAAATCAGEST: gi|37996896|gb|CF808485.1|CF808485
genomic: AGTGCAGAAGCTGAAGGCACTGAAGCCAAATATGCTGATAGAAGCCTTAGgtatgcattt ... attgttacagTTCCAGATTTTCGAGGAGATGCTGACTGTGTAGAGAAGGTTGCCAAATCAG
EST: AGTGCAGAAGCTGAAGGCACTGAAGCCAAATATGCTGATAGAAGCCTTAG TTCCAGATTTTCGAGGAGATGCTGACTGTGTAGAGAAGGTTGCCAAATCAGEST: gi|13125587|gb|BG316157.1|BG316157
genomic: AGTGCAGAAGCTGAAGGCACTGAAGCCAAATATGCTGATAGAAGCCTTAGgtatgcattt ... attgttacagTTCCAGATTTTCGAGGAGATGCTGACTGTGTAGAGAAGGTTGCCAAATCAG
EST: AAGCCAAATATGCTGATAGAAGCCTAAG TTCCAGATTTTCGAGGAGATGCTGACTGTGTAGAGAAGGTTGCCAAATCAGEST: gi|120530165|gb|EH258299.1|EH258299
genomic: AAGCCAAATATGCTGATAGAAGCCTTAGgtatgcattt ... attgttacagTTCCAGATTTTCGAGGAGATGCTGACTGTGTAGAGAAGGTTGCCAAATCAG
EST: AGTGCAGAAGCTGAAGGCACTGAAGCCAAATATGCTGATAGAAGCCTTAG TTCCAGATTTTCGAGGAGATGCTGACTGTGTAGAGAAGGTTGCCAAATCAG
genomic: AGTGCAGAAGCTGAAGGCACTGAAGCCAAATATGCTGATAGAAGCCTTAGgtatgcattt ... attgttacagTTCCAGATTTTCGAGGAGATGCTGACTGTGTAGAGAAGGTTGCCAAATCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGACCGTGATGATTTACCTGATCAAGGGAGTGGTCATTTTTCTGAAACAGTGCAGAAGCTGAAGGCACTGAAGCCAAATATGCTGATAGAAGCCTTAGgtatgcatttgaatatttgtacttcctgaatatttgcatgaacatctagttctatcaaatagcaaacaaccaagtctaatcctgatagatgggcacgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC