Sequence
atgc intronic sequence ATGC exonic sequenceGGATTGTTGGTGGAATTGGTTTGTATGCAGCTGCTAACAGTCTCTACAATGTTGAAGGAGGTCACCGAGCCATTGTTTTCAACTTGGTGTCAAAGACAAGgttattatatgaagaaaaaaattgaaaatgttttgctatttactgcattgcagtgcttgatgactgctacttggttatgattgtggtgttatgcttgatg...
Basic information
species | Glycine max |
transcript | GLYMA13G36940.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G36940.1 (Glycine max), 5'ss of exon 2
lower sequence: AT4G28510.1 (Arabidopsis thaliana), 5'ss of exon 2
GGATTGTTGGTGGAATTGGTTTGTATGCAGCTGCTAACAGTCTCTACAATGTTGAAGGAGGTCACCGAGCCATTGTTTTCAAC-------TTGGTGTCAAAGACAAGgttattatatgaagaaaaaaattgaaaatgttttgctatttactgcattgcagtgcttgatgactgctact--tggttatgattgtggtgttatgcttgatg
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-------TGGTGGGCTTGGTCTCTATGGTGCTACGCACAGTCTCTACAATGTTGAAGGAGGACATCGAGCCATCATGTTCAATCGTTTAGTCGGTATTAAAGATAAGgttagtcagtgtttcttcaaattgggtctttttggattttcagtaaatgtattttcccaatgagtttttttgctgtttgtgagatttggatgaaattttc--
upper sequence: GLYMA13G36940.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv15s0048g02350.t01 (Vitis vinifera), 5'ss of exon 3
GGATTGTTGGTGGAATTGGTTTGTATGCAGCTGCTAACAGTCTCTACAATGTTGAAGGAGGTCACCGAGCCATTGTTTTCAAC-------TTGGTGTCAAAGACAAGgttattatatgaagaaaaaaa-ttgaaaatgt--tttgctatttactgcattgcagtgcttgatgactgctacttggttatgattgtggtgttatgctt-gatg
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-------TGGTGGGCTTGGATTGTATGGAGCTATTAACAGTCTGTACAATGTTGAGGGAGGCCATCGGGCCATTGTGTTTAATCGCATAATTGGTGTCAAAGATAAGgttctcatttccccttggtttcttgcatatgagacctaaaatccattaaattat----ttttgtctctacttatatggtttttttgggtaattgcttttagatt
upper sequence: GLYMA13G36940.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv19s0085g00730.t01 (Vitis vinifera), 5'ss of exon 3
GGATTGTTGGTGGAATTGGTTTGTATGCAGCTGCTAACAGTCTCTACAATGTTGAAGGAGGTCACCGAGCCATTGTTTTCAAC-------TTGGTGTCAAAGACAAGgttattatatgaagaaaaaaa-ttgaaaatgt--tttgctatttactgcattgcagtgcttgatgactgc-tacttggttatgattgtggtgttatgcttgatg
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-------TGGTGGGCTTGGTTTGTATGGAGCTATTAACAGTCTGTACAATGTTGAGGGAGGTCATCGGGCCATTGTGTTTAATCGCATAGTTGGTGTCAAGGACAAGgttctcatttccccttggtttcttgcatatgagacctgaaatccattaaattatttttgtctctgcttatatggttttttgggtaattgcttttagattt----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192307653|gb|FG999692.1|FG999692EST: GTTGAAGGAGGTCACCGAGCCATTGTTTTCAACTTGGTGTCAAAGACAAG GTCTATCCTGAAGGAACTCACTTCATAATTCCGTGGTTTGAGAAGCCGGTT
genomic: GTTGAAGGAGGTCACCGAGCCATTGTTTTCAACTTGGTGTCAAAGACAAGgttattatat ... taatgtgcagGTCTATCCTGAAGGAACTCACTTCATAATTCCGTGGTTTGAGAAGCCGGTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGATTGTTGGTGGAATTGGTTTGTATGCAGCTGCTAACAGTCTCTACAATGTTGAAGGAGGTCACCGAGCCATTGTTTTCAACTTGGTGTCAAAGACAAGgttattatatgaagaaaaaaattgaaaatgttttgctatttactgcattgcagtgcttgatgactgctacttggttatgattgtggtgttatgcttgatg
- - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaaaaa