Sequence
atgc intronic sequence ATGC exonic sequenceGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAGgttttcattttctacttttttcgtttcgtcgtgttgaatgttgaatacgatgtttataatggtgattttgttatctgcag
Basic information
species | Glycine max |
transcript | GLYMA13G35580.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G35580.2 (Glycine max), 5'ss of exon 2
lower sequence: AT3G25520.1 (Arabidopsis thaliana), 5'ss of exon 2
GTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAGgttttc-attttctacttttttcgtttcgtcg--------tgttgaatgttgaatacgat--gtttataatggtgattttgttatc-tgcag
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GTGTTTGTGAAGTCCACCAAGTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAGgtaatagattgttgattcgttttattctgatgatattgtttgttctctctttgtttcaatctgtttctgaaaattattttatttttgtgtag
upper sequence: GLYMA13G35580.2 (Glycine max), 5'ss of exon 2
lower sequence: AT3G25520.2 (Arabidopsis thaliana), 5'ss of exon 2
GTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAGgttttc-attttctacttttttcgtttcgtcg--------tgttgaatgttgaatacgat--gtttataatggtgattttgttatc-tgcag--------
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GTGTTTGTGAAGTCCACCAAGTCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGAAGAGgtaatagattgttgattcgttttattctgatgatattgtttgttctctctttgtttcaatctgtttctgaaaattattttatttttgtgtagatggaaagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|17022323|gb|BM093357.1|BM093357EST: ATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAG AGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
genomic: ATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAGgttttcattt ... ttatctgcagAGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAGgttttcattttctacttttttcgtttcgtcgtgttgaatgttgaatacgatgtttataatggtgattttgttatctgcag
- - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG