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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCACAGTTTGCTCTTCGGTCATATTTGTACCTTTTATTTCATGAAATAGTGGGTCGACCAGCTTCATGGTTGTTTAGTGAGGACAAAgtaagtttcctgctgtgcttacttgttgaattgttacagattagatgagcttttcatgttaccattgtcttttcctgctgtag

Basic information

species Glycine max
transcript GLYMA13G34570.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G34570.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G051262_T01 (Zea mays), 5'ss of exon 2
TTCACAGTTTGCTCTTCGGTCATATTTGTACCTTTTATTTCATGAAATAGTGGGTCGACCAGCTTCATGGTTGTTTAGTGAGGACAAAgtaag---tttcctgctgtgcttacttgttga-attgttacagattagatg-------agcttttcatg-ttaccattgt-------cttttcctgctgtag--
|||  | ||||||||||||||||||||||||||||| |||||||   | || | | | || ||||||| | | ||| ||||| | || ||  |   | || | ||    |   || || | ||  ||| |   | | |        | || ||  || |||| | ||        | | | |||||||    
TTCCGACTTTGCTCTTCGGTCATATTTGTACCTTTTCTTTCATGCTCTTGTAGCTGGGCCTGCTTCATTGATCTTTGGTGAGCATAAGgtttgtgctctcttactcctttggtttcttcacatccttatatgctggctatccctttacctatttgtgcttactaatgatatctcacctattctgctgtgaag

upper sequence: GLYMA13G34570.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G051262_T02 (Zea mays), 5'ss of exon 2
TTCACAGTTTGCTCTTCGGTCATATTTGTACCTTTTATTTCATGAAATAGTGGGTCGACCAGCTTCATGGTTGTTTAGTGAGGACAAAgtaagtttcctgctgtgcttacttgttgaattgttacagattagatgagcttttcatgttaccattgtcttttcctgctgtag
|||  | ||||||||||||||||||||||||||||| |||||||   | || | | | || ||||||| | | ||| ||||| | || ||  ||   ||      ||||||  ||   ||  | || ||        | ||  ||| |  |  |  |||| |||  |   |
TTCCGACTTTGCTCTTCGGTCATATTTGTACCTTTTCTTTCATGCTCTTGTAGCTGGgcctgcttcattgatctttggtgagcataaggtttgtgctct------cttactcctttggtttcttcacat--------ccttatatgctggctatccctttacctatttgtg

upper sequence: GLYMA13G34570.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv19s0014g01410.t01 (Vitis vinifera), 5'ss of exon 2
TTCACAGTTTGCTCTTCGGTCATATTTGTACCTTTTATTTCATGAAATAGTGGGTCGACCAGCTTCATGGTTGTTTAGTGAGGACAAAgtaagtttcctgctgtgcttac-----ttgttg----aattgttacagattagatgagcttttcatgttaccatt--gtcttttcctgctgtag------------------------------------
 || |||||||| |||||||||||||| || ||  | ||||||||| ||||||||  ||||||||| ||||||| | ||| ||| || ||||| |   | |||| |||       || |||    ||||| |   |||| ||  |  |||||||||   || |  |   |    |  ||| |                                    
CTCCCAGTTTGCCCTTCGGTCATATTTATATCTCCTTTTTCATGAATTAGTGGGTAAACCAGCTTCCTGGTTGTATGGTGGGGAAAAGgtaagatctat-ctgtactttgaaatattattgtcacaattgcttttgattgga--aaattttcatgtcttcaattggatataatgtattgttggtgtcatctctgtaaggctctttcttgtcataacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151397192|gb|EV267065.1|EV267065
EST:     TTCATGAAATAGTGGGTCGACCAGCTTCATGGTTGTTTAGTGAGGACAAA                         GTGAGAGTGTTCTATGCTGTGAGATTCTTTCTCGGTCTTCTCTCTGTTTTG
genomic: TTCATGAAATAGTGGGTCGACCAGCTTCATGGTTGTTTAGTGAGGACAAAgtaagtttcc ... cctgctgtagGTGAGAGTGTTCTATGCTGTGAGATTCTTTCTCGGTCTTCTCTCTGTTTTG
EST: gi|207752598|gb|GD724940.1|GD724940
EST:     TTCATGAAATAGTGGGTCGACCAGCTTCATGGTTGTTTAGTGAGGACAAA                         GTGAGAGTGTTCTATGCTGTGAGATTCTTTCTCGGTCTTCTCTCTGTTTTG
genomic: TTCATGAAATAGTGGGTCGACCAGCTTCATGGTTGTTTAGTGAGGACAAAgtaagtttcc ... cctgctgtagGTGAGAGTGTTCTATGCTGTGAGATTCTTTCTCGGTCTTCTCTCTGTTTTG
EST: gi|193313985|gb|FK282460.1|FK282460
EST:     TTCATGAAATAGTGGGTCGACCAGCTTCATGGTTGTTTAGTGAGGACAAA                         GTGAGAGTGTTCTATGCTGTGAGATTCTTTCTCGGTCTTCTCTCTGTTTTG
genomic: TTCATGAAATAGTGGGTCGACCAGCTTCATGGTTGTTTAGTGAGGACAAAgtaagtttcc ... cctgctgtagGTGAGAGTGTTCTATGCTGTGAGATTCTTTCTCGGTCTTCTCTCTGTTTTG
EST: gi|19452475|gb|BM953885.1|BM953885
EST:     TTCATGAAATAGTGGGTCGACCAGCTTCATGGTTGTTTAGTGAGGACAAA                         GTGAGAGTGTTCTATGCTGTGAGATTCTTTCTCGG
genomic: TTCATGAAATAGTGGGTCGACCAGCTTCATGGTTGTTTAGTGAGGACAAAgtaagtttcc ... cctgctgtagGTGAGAGTGTTCTATGCTGTGAGATTCTTTCTCGG