Sequence
atgc intronic sequence ATGC exonic sequenceATCAAAACTCCCACCTGTCTCATTCTAGCTGTCACACCAGCTAATTCAGATTTGGCTAATTCAGATGCTCTTCAGATGGCAGGGATTGCTGATCCTGATGgtgagtttttgcttccatgtctctgaaacttaaatcttttcacacctctctaattaattggtttttaaagtttcttgtatctgttgcag
Basic information
species | Glycine max |
transcript | GLYMA13G32940.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G32940.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os04g31190.1 (Oryza sativa), 5'ss of exon 2
ATCAAAACTCCCACCTGTCTCATTCTAGCTGTCACACCAGCTAATTCAGATTTGGCTAATTCAGATGCTCTTCAGATGGCAGGGATTGCTGATCCTGATGgtgagtttttgcttccatgtctctgaaacttaaatcttttcacacctctctaattaattggtttttaaagtttcttgtatctgttgcag
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ATTAAGCATCCAAGTTGTATTATCTTGGCTGTCACTCCGGCTAATGCAGATTTAGCTAATTCGGATGCTCTCCAACTGGCAAAGCTTGCTGATCCTGATGgtacttaaataactctggttgt---agttataagtttctttaccgtggaatgatttatgaatgc---aaatttattgttgttctggcag
upper sequence: GLYMA13G32940.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G129155_T02 (Zea mays), 5'ss of exon 2
ATCAAAACTCCCACCTGTCTCATTCTAGCTGTCACACCAGCTAATTCAGATTTGGCTAATTCAGATGCTCTTCAGATGGCAGGGATTGCTGATCCTGATGgtgagtttttgct------tccatgtctctgaaacttaaatcttttcacacctctctaattaattggtttttaaagtttcttgtatctgttgcag
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ATCAGGCACAAGACATGCATCATCTTAGCTGTTTCGCCAGCAAATGCAGATTTAGCAAACTCTGATGCTCTTCAAATGGCTCGGGTTGCTGATCCTGATGgtatgtgtgccctgcataatctacgtc-ctgtccactataacatttcagttcagaaatattatcttatcatgatgatttattattttcatag---
upper sequence: GLYMA13G32940.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv03s0038g00970.t01 (Vitis vinifera), 5'ss of exon 2
ATCAAAACTCCCACCTGTCTCATTCTAGCTGTCACACCAGCTAATTCAGATTTGGCTAATTCAGATGCTCTTCAGATGGCAGGGATTGCTGATCCTGATGgtgagttt-ttgcttccatgtctctgaaacttaaatcttttcacacctctctaa---ttaattggtttttaaagtt-tcttgtatctgttgcag-------------------
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ATCAAACTCCCAAGCTGTCTGATATTAGCTGTTACACCGGCGAATTCAGATTTAGCCAACTCAGATGCTCTTCAGATAGCGGGAAATGCTGATCCTGATGgtaagtctgctgctgatgcctccatggggttgatgtctgtatatttggttgaaaaattaaaatgggtcatgatctgattttacatctttcatgtgatatttttctgtggacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|7692076|gb|AW760191.1|AW760191EST: TTTGGCTAATTCAGATGCTCTTCAGATGGCAGGGATTGCTGATCCTGATG GTAATAGAACAATCGGTGTAATCACAAAG
genomic: TTTGGCTAATTCAGATGCTCTTCAGATGGCAGGGATTGCTGATCCTGATGgtgagttttt ... tctgttgcagGTAATAGAACAATCGGTGTAATCACAAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATCAAAACTCCCACCTGTCTCATTCTAGCTGTCACACCAGCTAATTCAGATTTGGCTAATTCAGATGCTCTTCAGATGGCAGGGATTGCTGATCCTGATGgtgagtttttgcttccatgtctctgaaacttaaatcttttcacacctctctaattaattggtttttaaagtttcttgtatctgttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT