Sequence
atgc intronic sequence ATGC exonic sequenceTCCGTTGGACAAACTATCTACGACCAGATATAAAGCGAGGTCGGTTTTCATTTGAAGAGGAAGAGACAATAATTCAACTACATAGCATTCTTGGCAACAAgtgagttataatttctttctattttttttcttttatagctttcagtcaagttattaattaaataaatgacaactaacttgagtcaaataaatttaagaca...
Basic information
species | Glycine max |
transcript | GLYMA13G32090.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G32090.1 (Glycine max), 5'ss of exon 2
lower sequence: AT4G05100.1 (Arabidopsis thaliana), 5'ss of exon 2
TCCGTTGGACAAACTATCTACGACCAGATATAAAGCGAGGTCGGTTTTCATTTGAAGAGGAAGAGACAATAATTCAACTACATAGCATTCTTGGCAACAAgtgagttataatttct------ttctattttttttctttta--tagctttcagtcaagttattaattaaataaatgacaactaacttgag----tcaaataaatttaagaca-------------------------------------------------------
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TCCGGTGGACCAACTATCTCCGACCAGATATTAAGCGTGGAAGATTCTCTTTTGAAGAAGAAGAAACCATTATTCAACTTCACAGCATCATGGGAAACAAgtgagtttgaacttttcaataattttatatttttgccattacgtagtttatacgaaaactactaatcttgtagattagtcttagagtcatagctttgaatgatgttactagtgatttatgttaaatctacaatgcatcagattctaactttgtttgctttcgtatagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19271091|gb|BM887347.1|BM887347EST: TTTGAAGAGGAAGAGACAATAATTCAACTACATAGCATTCTTGGCAACAA ATGGTCTGCCATTGCATCTCGCTTACCAGGAAGGACTGACAATGAAATAAA
genomic: TTTGAAGAGGAAGAGACAATAATTCAACTACATAGCATTCTTGGCAACAAgtgagttata ... ttatgtgtagATGGTCTGCCATTGCATCTCGCTTACCAGGAAGGACTGACAATGAAATAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCCGTTGGACAAACTATCTACGACCAGATATAAAGCGAGGTCGGTTTTCATTTGAAGAGGAAGAGACAATAATTCAACTACATAGCATTCTTGGCAACAAgtgagttataatttctttctattttttttcttttatagctttcagtcaagttattaattaaataaatgacaactaacttgagtcaaataaatttaagaca
- - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA