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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGTATAGTTACCTTAACATATCCATTAGTAGAAACATTGTGCCAGATGAAATCAAAGGCAGGGAAATTCACCACTCTTTTCCAATGACACTTTTTCAGgtatggcttgcttctgcagtctgcacactttgagttgtgctaaaattttgggcagaatgaatttgatctactcacaagaaatttgcagatgtatatgatgttggtgatgtcataatattcacaattttgtaaattgatcttctgcag

Basic information

species Glycine max
transcript GLYMA13G31920.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G31920.1 (Glycine max), 5'ss of exon 2
lower sequence: AT4G21570.1 (Arabidopsis thaliana), 5'ss of exon 3
GATGTATAGTTACCTTAACATATCCATTAGTAGAAACATTGTGCCAGATGAAATCAAAGGCAGGGAAATTCACCACTCTTTTCCAATGACACTTTTTCAGgtatggcttgcttctgcagtctgcacactttgagttgtgctaaaattttgggcagaatgaatttgatctactcacaagaaatttgcagatgtatatgatgttggtgatgtcataatattcacaattttgtaaattgatcttctgcag
|||||||||||| || |||||||| || || | ||||||| |||| |||| ||||||||| || || |||||||| ||||| |||||||| |||||||||||     | |  |||    ||| ||     ||| ||   |||| || |        ||    ||  | ||| |  || |  ||||    ||| |||  | |||                                            
GATGTATAGTTATCTAAACATATCTATGAGCAAAAACATTTTGCCTGATGGAATCAAAGGAAGAGAGATTCACCATTCTTTCCCAATGACTCTTTTTCAGgt-----tcgtctcta---tcttcattgcatgatttcatctaatatct--------atttgcttc-tttacccttaaaagctttg----tgtctattgttttgacag----------------------------------------

upper sequence: GLYMA13G31920.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv00s0404g00020.t01 (Vitis vinifera), 5'ss of exon 3
GATGTATAGTTACCTTAACATATCCATTAGTAGAAACATTGTGCCAGATGAAATCAAAGGCAGGGAAATTCACCACTCTTTTCCAATGACACTTTTTCAGgtatggcttg---cttctgcagtctgcacactttgagttgtgctaaaattttgggcagaatgaatttgatctactcacaagaaatttgcagatgtatatgatgttggtgatgtcataatattcacaattttgtaaattgatcttctgcag
  ||||||| ||| | ||||||||||| || | |||||| |||||||||| ||| ||||| || |||||||||||||| || |||||||||||||| |||||  |          ||  |  | |     |   | ||    || | |   |   |   |  ||| || | |  | |  ||  ||||  |  |  ||| |                                                  
ATTGTATAGCTACTTGAACATATCCATCAGCAAAAACATAGTGCCAGATGGAATTAAAGGGAGAGAAATTCACCACTCATTCCCAATGACACTTTTCCAGgtgagaaagaagttatcctctctttatttccccagggtcaatctgagaagattatcttcaataatgtgttatggt-aagagctatttcaatttcaataggg-------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208110971|gb|GD908731.1|GD908731
EST:     TTCACCACTCTTTTCCAATGACACTTTTTCAG                         CCTCGTACTGTTCGGCTGAACCACCATAATTTGAAGCTTCTAAAATATTGG
genomic: TTCACCACTCTTTTCCAATGACACTTTTTCAGgtatggcttg ... tcttctgcagCCTCGTACTGTTCGGCTGAACCACCATAATTTGAAGCTTCTAAAATATTGG
EST: gi|192303741|gb|FG996007.1|FG996007
EST:     AAATCAAAGGCAGGGAAATTCACCACTCTTTTCCAATGACACTTTTTCAG                         CCTCGTACTGTTCGGCTGAACCACCATAATTTGAAGCTTCTAAAATATTGG
genomic: AAATCAAAGGCAGGGAAATTCACCACTCTTTTCCAATGACACTTTTTCAGgtatggcttg ... tcttctgcagCCTCGTACTGTTCGGCTGAACCACCATAATTTGAAGCTTCTAAAATATTGG
EST: gi|192303742|gb|FG996008.1|FG996008
EST:     AAATCAAAGGCAGGGAAATTCACCACTCTTTTCCAATGACACTTTTTCAG                         CCTCGTACTGTTCGGCTGAACCACCATAATTTGAAGCTTCTAAAATATTGG
genomic: AAATCAAAGGCAGGGAAATTCACCACTCTTTTCCAATGACACTTTTTCAGgtatggcttg ... tcttctgcagCCTCGTACTGTTCGGCTGAACCACCATAATTTGAAGCTTCTAAAATATTGG
EST: gi|193569388|gb|FK527147.1|FK527147
EST:     AAATCAAAGGCAGGGAAATTCACCACTCTTTTCCAATGACACTTTTTCAG                         CCTCGTACTGTTCGGCTGAACCACCATAATTTGAAGCTTCTAAAATATTGG
genomic: AAATCAAAGGCAGGGAAATTCACCACTCTTTTCCAATGACACTTTTTCAGgtatggcttg ... tcttctgcagCCTCGTACTGTTCGGCTGAACCACCATAATTTGAAGCTTCTAAAATATTGG
EST: gi|192324572|gb|FK016463.1|FK016463
EST:     AAATCAAAGGCAGGGAAATTCACCACTCTTTTCCAATGACACTTTTTCAG                         CCTCGTACTGTTCGGCTGAACCACCATAATTTGAAGCTTCTAAAATATTGG
genomic: AAATCAAAGGCAGGGAAATTCACCACTCTTTTCCAATGACACTTTTTCAGgtatggcttg ... tcttctgcagCCTCGTACTGTTCGGCTGAACCACCATAATTTGAAGCTTCTAAAATATTGG
EST: gi|254322281|gb|GR837695.1|GR837695
EST:     AAATCAAAGGCAGGGAAATTCACCACTCTTTTCCAATGACACTTTTTCAG                         CCTCGTACTGTTCGGCTGAACCACCATAATTTGAAGCTTCTAAAATATTGG
genomic: AAATCAAAGGCAGGGAAATTCACCACTCTTTTCCAATGACACTTTTTCAGgtatggcttg ... tcttctgcagCCTCGTACTGTTCGGCTGAACCACCATAATTTGAAGCTTCTAAAATATTGG
EST: gi|298173693|gb|HO017029.1|HO017029
EST:     AAATCAAAGGCAGGGAAATTCACCACTCTTTTCCAATGACACTTTTTCAG                         CCTCGTACTGTTCGGCTGAACCACCATAATTTGAAGCTTCTAAAATATTGG
genomic: AAATCAAAGGCAGGGAAATTCACCACTCTTTTCCAATGACACTTTTTCAGgtatggcttg ... tcttctgcagCCTCGTACTGTTCGGCTGAACCACCATAATTTGAAGCTTCTAAAATATTGG
EST: gi|193597217|gb|FK554027.1|FK554027
EST:     AAATCAAAGGCAGGGAAATTCACCACTCTTTTCCAATGACACTTTTTCAG                         CCTCGTACTGTTCGGCTGAACCACCATAATTTGAAGCTTCTAAAATATTGG
genomic: AAATCAAAGGCAGGGAAATTCACCACTCTTTTCCAATGACACTTTTTCAGgtatggcttg ... tcttctgcagCCTCGTACTGTTCGGCTGAACCACCATAATTTGAAGCTTCTAAAATATTGG
EST: gi|192293831|gb|FG986040.1|FG986040
EST:     AAATCAAAGGCAGGGAAATTCACCACTCTTTTCCAATGACACTTTTTCAG                         CCTCGTACTGTTCGACTGAACCACCATAATTTGAAGCTTCTAAAATATTGG
genomic: AAATCAAAGGCAGGGAAATTCACCACTCTTTTCCAATGACACTTTTTCAGgtatggcttg ... tcttctgcagCCTCGTACTGTTCGGCTGAACCACCATAATTTGAAGCTTCTAAAATATTGG
EST: gi|298180341|gb|HO025542.1|HO025542
EST:     AAATCAAAGGCAGGGAAATTCACCACTCTTTTCCAATGACACTTTTTCAG                         CCTCGTACTGTTCGGCTGAACCACCATAATTTGAAGCTTCTAAAAT
genomic: AAATCAAAGGCAGGGAAATTCACCACTCTTTTCCAATGACACTTTTTCAGgtatggcttg ... tcttctgcagCCTCGTACTGTTCGGCTGAACCACCATAATTTGAAGCTTCTAAAAT
EST: gi|193422792|gb|FK388781.1|FK388781
EST:     AATCAAAGGCAGGGAAATTCACCACTCTTTTTCCAATGACACTTTTTCAG                         CCTCGTACTGTTCGGCTGAACCACCATAATTTGAAGCTTCTAAAATATTGG
genomic: AATCAAAGGCAGGGAAATTCACCACTC-TTTTCCAATGACACTTTTTCAGgtatggcttg ... tcttctgcagCCTCGTACTGTTCGGCTGAACCACCATAATTTGAAGCTTCTAAAATATTGG
EST: gi|193520416|gb|FK475047.1|FK475047
EST:     AAATCAAAGGCAGGGAAATTCACCACTCTTTTCCAATGACACTTTTTCAG                         CCTCGTACTGTTCGGCTGAACCACCATAATTTGAAGCTTCTAAAATATTGG
genomic: AAATCAAAGGCAGGGAAATTCACCACTCTTTTCCAATGACACTTTTTCAGgtatggcttg ... tcttctgcagCCTCGTACTGTTCGGCTGAACCACCATAATTTGAAGCTTCTAAAATATTGG
EST: gi|193400730|gb|FK368357.1|FK368357
EST:     AAATCAAAGGCAGGGAAATTCACCACTCTTTTCCAATGACACTTTTTCAG                         CCTCGTACTGTTCGGCTGAACCACCATAATTTGAAGCTTCTAAAATATTGG
genomic: AAATCAAAGGCAGGGAAATTCACCACTCTTTTCCAATGACACTTTTTCAGgtatggcttg ... tcttctgcagCCTCGTACTGTTCGGCTGAACCACCATAATTTGAAGCTTCTAAAATATTGG