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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCATTAGACATTTTGATGGTTGCAAGGCTGACCTGGTTGTGTGTGATGGTGCTCCTGATGgtaaataatgctcaatttaacttgataatgtcttcacacacaatattagagaagtgcaatttcacacgaaaattatttttatgaaaagctacataagaag...

Basic information

species Glycine max
transcript GLYMA13G31350.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G31350.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os06g49140.1 (Oryza sativa), 5'ss of exon 6
GTCATTAGACATTTTGATGGTTGCAAGGCTGACCTGGTTGTGTGTGATGGTGCTCCTGATGgtaa-ataatgctcaatttaacttgataatgtcttcacacacaatattagagaagtgcaatttcacacgaaaattat-ttttatgaaaagctacataagaag
|| ||||| ||||||||||| ||||| || ||  ||||||| || |||||||||||||||||||| ||| || |     | |||||  |     || |   |    ||||||  |     || |  || |   ||||| |  | ||      ||||       
GTTATTAGGCATTTTGATGGATGCAAAGCAGATTTGGTTGTCTGCGATGGTGCTCCTGATGgtaagatagtgatgtcccttacttg-catcccatttatttatggcattagactacatgtatgtttcatgcttattatgtgctttgggttattacag------

upper sequence: GLYMA13G31350.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G083745_T03 (Zea mays), 5'ss of exon 6
GTCATTAGACATTTTGATGGTTGCAAGGCTGACCTGGTTGTGTGTGATGGTGCTCCTGATGgtaa-ataatgctcaatttaacttgataatgtcttcacacacaatattagagaagtgcaatttcacacgaaaattatttttatgaaaagctacataagaag
|||||||| ||||||||||| ||||| || ||| ||||||| || ||||| || || |||||||| |||       | |  |   ||    ||  |    ||   | |   |  ||||    || ||| ||  |||  | || ||     |||||       
GTCATTAGGCATTTTGATGGATGCAAAGCAGACTTGGTTGTTTGCGATGGAGCCCCGGATGgtaagatatcatatcagtgcaagagacttggttgttttgcaatttttatcactagtgaggatt-acatgattattgctcttttgggtgactacag------

upper sequence: GLYMA13G31350.1 (Glycine max), 5'ss of exon 2
lower sequence: AT5G01230.1 (Arabidopsis thaliana), 5'ss of exon 7
GTCATTAGACATTTTGATGGTTGCAAGGCTGACCTGGTTGTGTGTGATGGTGCTCCTGATGgtaaataatgctcaatttaacttgataatgtcttcacacacaatattagagaagtgcaatttcacacgaaaattatttttatgaaaagctacataagaag
||||||||||| ||||| || ||||| || ||||||||||| |||||||||||||| ||||||||  ||   |  ||  |   |     |||||   |   ||||||     |   |  ||   | |  ||||    |||||  |   | |    |     
GTCATTAGACACTTTGACGGCTGCAAAGCGGACCTGGTTGTCTGTGATGGTGCTCCAGATGgtaa--aacagtagataaagtgtc----tgtctcgccgttcaatat-----atacgttatgctata-aaaaacgccttttacaatttggtttgcag----

upper sequence: GLYMA13G31350.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv08s0007g01960.t01 (Vitis vinifera), 5'ss of exon 6
GTCATTAGACATTTTGATGGTTGCAAGGCTGACCTGGTTGTGTGTGATGGTGCTCCTGATGgt-----aaataatgctcaatttaacttgata----atgtcttcacacacaatattagagaagtgcaatttcacacgaaaatta-tttttatgaaaagctacataagaag
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||     ||   ||  |   || ||||| ||     |||  |        |  |  || |   ||   ||||  | |   || | ||| | |||  |  | ||       
GTCATTAGGCATTTTGATGGATGCAAGGCTGACCTGGTTGTGTGTGATGGTGCTCCTGATGgttaggcaacatatattgttttcaacttcatggtttatgcttctgtttctaccagcagtggtttgtt-tttcttaagttgatcagtttctgtgatgatttgcag------