1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GGAGGCGAACAAAGAAACTCAGAGACCCGAAGGCAGATTTCAAGATGAAGgtttgttgtcctctgaaaccctacttttgctttctgcttcgatttcttgccattgggactaattatgtccgcacacaacttcttttgcag
species | Glycine max |
transcript | GLYMA13G31130.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GGAGGCGAACAAAGAAACTCAGAGACCCGAAGGCAGATTTCAAGATGAAG TTCAACATTGCGAATCCCACCACCGGTTGTCAGAAGAAGCTGGAGATCGATEST: gi|298182669|gb|HO031404.1|HO031404
genomic: GGAGGCGAACAAAGAAACTCAGAGACCCGAAGGCAGATTTCAAGATGAAGgtttgttgtc ... tcttttgcagTTCAACATTGCGAATCCCACCACCGGTTGTCAGAAGAAGCTGGAGATCGAT
EST: GGAGGCGAACAGAGAAACTCAGAGACCCGAAGGCAGATTTCAAGATGAAG TTCAACATTGCGAATCCCACCACCGGTTGTCAGAAGAAGCTGGAGATCGATEST: gi|193708153|gb|FK642459.1|FK642459
genomic: GGAGGCGAACAAAGAAACTCAGAGACCCGAAGGCAGATTTCAAGATGAAGgtttgttgtc ... tcttttgcagTTCAACATTGCGAATCCCACCACCGGTTGTCAGAAGAAGCTGGAGATCGAT
EST: GGAGGCGAACAAAGAAACTCAGAGACCCGAAGGCAGATTTCAAGATGAAG TTCAACATTGCGAATCCCACCACCGGTTGTCAGAAGAAGCTGGAGATCGATEST: gi|151407299|gb|EV277114.1|EV277114
genomic: GGAGGCGAACAAAGAAACTCAGAGACCCGAAGGCAGATTTCAAGATGAAGgtttgttgtc ... tcttttgcagTTCAACATTGCGAATCCCACCACCGGTTGTCAGAAGAAGCTGGAGATCGAT
EST: AGAGACCCGAAGGCAGATTTCAAGATGAAG TTCAACATTGCGAATCCCACCACCGGTTGTCAGAAGAAGCTGGAGATCGATEST: gi|41145367|gb|CK605578.1|CK605578
genomic: AGAGACCCGAAGGCAGATTTCAAGATGAAGgtttgttgtc ... tcttttgcagTTCAACATTGCGAATCCCACCACCGGTTGTCAGAAGAAGCTGGAGATCGAT
EST: GGAGGCGAACAAAGAAACTCAGAGACCCGAAGGCAGATTTCAAGATGAAG TTCAACATTACGAATCCCACCACCGGTTGTCAGAAGAAGCTGGAGATCGATEST: gi|11413313|gb|BF425324.1|BF425324
genomic: GGAGGCGAACAAAGAAACTCAGAGACCCGAAGGCAGATTTCAAGATGAAGgtttgttgtc ... tcttttgcagTTCAACATTGCGAATCCCACCACCGGTTGTCAGAAGAAGCTGGAGATCGAT
EST: GGAGGCGAACAAAGAAACTCAGAGACCCGAAGGCAGATTTCAAGATGAAG TTCAACATTGCGAATCCCACCACCGGTTGTCAGAAGAAGCTGGAGATCGATEST: gi|298173823|gb|HO017159.1|HO017159
genomic: GGAGGCGAACAAAGAAACTCAGAGACCCGAAGGCAGATTTCAAGATGAAGgtttgttgtc ... tcttttgcagTTCAACATTGCGAATCCCACCACCGGTTGTCAGAAGAAGCTGGAGATCGAT
EST: GGAGGCGAACAGAGAAACTCAGAGACCCGAAGGCAGATTTCAAGATGAAG TTCAACATTGCGAATCCCACCACCGGTCGTCAGAAGAAGCTGGAGATCGATEST: gi|151403312|gb|EV273122.1|EV273122
genomic: GGAGGCGAACAAAGAAACTCAGAGACCCGAAGGCAGATTTCAAGATGAAGgtttgttgtc ... tcttttgcagTTCAACATTGCGAATCCCACCACCGGTTGTCAGAAGAAGCTGGAGATCGAT
EST: GGAGGCGAACAAAGAAACTCAGAGACCCGAAGGCAGATTTCAAGATGAAG TTCAACATTGCGAATCCCACCACCGGTTGTCAGAAGAAGCTGGAGATCGATEST: gi|298175030|gb|HO018025.1|HO018025
genomic: GGAGGCGAACAAAGAAACTCAGAGACCCGAAGGCAGATTTCAAGATGAAGgtttgttgtc ... tcttttgcagTTCAACATTGCGAATCCCACCACCGGTTGTCAGAAGAAGCTGGAGATCGAT
EST: GGAGGCGAACAGAGAAACTCAGAGACCCGAAGGCAGATTTCAAGATGAAG TTCAACATTGCGAATCCCACCACCGGTTGTCAGAAGAAGCTGGAGATCGATEST: gi|298181172|gb|HO022611.1|HO022611
genomic: GGAGGCGAACAAAGAAACTCAGAGACCCGAAGGCAGATTTCAAGATGAAGgtttgttgtc ... tcttttgcagTTCAACATTGCGAATCCCACCACCGGTTGTCAGAAGAAGCTGGAGATCGAT
EST: GGAGGCGAACAGAGAAACTCAGAGACCCGAAGGCAGATTTCAAGATGAAG TTCAACATTGCGAATCCCACCACCGGTTGTCAGAAGAAGCTGGAGATCGATEST: gi|298190922|gb|HO038401.1|HO038401
genomic: GGAGGCGAACAAAGAAACTCAGAGACCCGAAGGCAGATTTCAAGATGAAGgtttgttgtc ... tcttttgcagTTCAACATTGCGAATCCCACCACCGGTTGTCAGAAGAAGCTGGAGATCGAT
EST: GGAGGCGAACAGAGAAACTCAGAGACCCGAAGGCAGATTTCAAGATGAAG TTCAACATTGCGAATCCCACCACCGGTTGTCAGAAGAAGCTGGAGATCGATEST: gi|17519909|gb|BM188951.1|BM188951
genomic: GGAGGCGAACAAAGAAACTCAGAGACCCGAAGGCAGATTTCAAGATGAAGgtttgttgtc ... tcttttgcagTTCAACATTGCGAATCCCACCACCGGTTGTCAGAAGAAGCTGGAGATCGAT
EST: GGAGGCGAACAAAGAAACTCAGAGACCCGAAGGCAGATTTCAAGATGAAG TTCAACATTGCGAATCCCACCACCGGTTGTCAGAAGAAGCTGGAGATCGATEST: gi|18040763|gb|BM309057.1|BM309057
genomic: GGAGGCGAACAAAGAAACTCAGAGACCCGAAGGCAGATTTCAAGATGAAGgtttgttgtc ... tcttttgcagTTCAACATTGCGAATCCCACCACCGGTTGTCAGAAGAAGCTGGAGATCGAT
EST: GAGGCGAACAGAGAAACTCAGAGACCCGAAGGCAGATTTCAAGATGAAG TTCAACATTGCGAATCCCACCACCGGTTGTCAGAAGAAGCTGGAGATCGATEST: gi|8283060|gb|BE020621.1|BE020621
genomic: GAGGCGAACAAAGAAACTCAGAGACCCGAAGGCAGATTTCAAGATGAAGgtttgttgtc ... tcttttgcagTTCAACATTGCGAATCCCACCACCGGTTGTCAGAAGAAGCTGGAGATCGAT
EST: GGAGGCGAACAGAGAAACTCAGAGACCCGAAGGCAGATTTCAAGATGAAG TTCAACATTGCGAATCCCACCACCGGTTGTCAGAAGAAGCTGGAGATCGATEST: gi|10846367|gb|BF071320.1|BF071320
genomic: GGAGGCGAACAAAGAAACTCAGAGACCCGAAGGCAGATTTCAAGATGAAGgtttgttgtc ... tcttttgcagTTCAACATTGCGAATCCCACCACCGGTTGTCAGAAGAAGCTGGAGATCGAT
EST: GGAGGCGAACAAAGAAACTCAGAGACCCGAAGGCAGATTTCAAGATGAAG TTCAACATTGCGAATCCCACCACCGGTTGTCAGAAGAAGCTGGAGATCGATEST: gi|192326806|gb|FK018558.1|FK018558
genomic: GGAGGCGAACAAAGAAACTCAGAGACCCGAAGGCAGATTTCAAGATGAAGgtttgttgtc ... tcttttgcagTTCAACATTGCGAATCCCACCACCGGTTGTCAGAAGAAGCTGGAGATCGAT
EST: GGAGGCGAACAAAGAAACTCAGAGACCCGAGGGCAGATTTCAAGATGAAG TTCAACATTGCGAATCCCACCACCGGTTGTCAGAAGAAGCTGGAGATCGATEST: gi|17400921|gb|BM177703.1|BM177703
genomic: GGAGGCGAACAAAGAAACTCAGAGACCCGAAGGCAGATTTCAAGATGAAGgtttgttgtc ... tcttttgcagTTCAACATTGCGAATCCCACCACCGGTTGTCAGAAGAAGCTGGAGATCGAT
EST: TCAAGATGAAG TTCAACATTGCGAATCCCACCACCGGTTGTCAGAAGAAGCTGGAGATCGAT
genomic: TCAAGATGAAGgtttgttgtc ... tcttttgcagTTCAACATTGCGAATCCCACCACCGGTTGTCAGAAGAAGCTGGAGATCGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGGCGAACAAAGAAACTCAGAGACCCGAAGGCAGATTTCAAGATGAAGgtttgttgtcctctgaaaccctacttttgctttctgcttcgatttcttgccattgggactaattatgtccgcacacaacttcttttgcag
- - - - - AAAGAA
- - - - - AAGAAA
- - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - AAGATG