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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGATGAGTTGCATGTCATGGATGGTTGGGATATTAATTCGGTTGATCCTTGTACTTGGAACATGGTTGGTTGCTCTGCCGAAGGTTATGTTATTTCCCTgtaagtctttttgttgctaatttctatcacaagtcttaagattgcttccttctttttttaactatgaacaatgtaacatgttttacattttatcatttgt...

Basic information

species Glycine max
transcript GLYMA13G30050.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G30050.1 (Glycine max), 5'ss of exon 2
lower sequence: AT5G45780.1 (Arabidopsis thaliana), 5'ss of exon 2
ATGATGAGTTGCATGTCATGGATGGTTGGGATATTAATTCGGTTGATCCTTGTACTTGGAACATGGTTGGTTGCTCTGCCGAAGGTTATGTTATTTCCCTgtaagtctttttgttgctaatttctatcacaagtcttaagattgcttcctt-ctttttttaactatgaacaatgtaacatgttttacattttatcatttgt
| ||||||    | ||  ||  ||||||||||||||| || |||||||||||||||||||||||||||||||| ||| | ||||||| |||  |||| |||| ||| | |||  |||  |   ||    | |  || ||  |  ||      | ||| ||  ||  |   | || ||  | |  | ||             
AAGATGAGAAAGAGGTTTTGTCTGGTTGGGATATTAACTCTGTTGATCCTTGTACTTGGAACATGGTTGGTTGTTCTTCTGAAGGTTTTGTGGTTTCTCTgtgagtatcttt--tgcacaccacttgttcga--ctaaatgtctctgagaaacgtttctttgctgagtttattgaaatctttaatgcag------------

upper sequence: GLYMA13G30050.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv10s0003g01490.t01 (Vitis vinifera), 5'ss of exon 2
ATGATGAGTTGCATGTCATGGATGGTTGGGATATTAATTCGGTTGATCCTTGTACTTGGAACATGGTTGGTTGCTCTGCCGAAGGTTATGTTATTTCCCTgtaagtctttt--tgttgctaatttctatcacaagtc----ttaagattgcttccttcttttt--ttaactatgaacaatgtaacatgttttacattttatca-tttgt--------------------------------------------------
||||||||| | ||||  | ||||| ||||||||||| || |||||||| ||||||||||||||||| |||||| || | || ||||  || ||||| ||||||||||     ||   |   || || |     ||     | || || |    || |||||   | |  |  |   |   | | |  || | || |     | | ||                                                   
ATGATGAGTCGAATGTGCTTGATGGGTGGGATATTAACTCTGTTGATCCCTGTACTTGGAACATGGTGGGTTGCACTCCTGAGGGTTTCGTCATTTCTCTgtaagtctaccactgcccccgtttcctctgtttggttgccgtgaaaatggaactctgcttttcagtcagttgggtgtaggtttatagtttattcaatgcccaaatctgctgagttttactatatctttgcacttaataaaagttctcgactcttgacag