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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGGgtaataataattcattcacttcaattttaacattcattgtttctgaattatgttatttaacctctagtagtaatggcttcaacag

Basic information

species Glycine max
transcript GLYMA13G29400.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G29400.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv04s0008g00760.t01 (Vitis vinifera), 5'ss of exon 2
GTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGGgtaataataattcattcacttcaattttaacattcattgtttctga-attatgttatttaacctctagtagta-atggcttcaacag-------------
||| ||||||| ||||||||    ||||||||||||||||||||||| |||||||||||  ||||| || ||||||| | ||||    || |   |  |       |||  | |   |  ||   || | | || | || || |   | |  |  ||   || |  |              
GTATCTGCTTTAAATGAGGCTGTGCCAGGAAGTGTTAAGTCAGTTTTTAAAGCTTGGGAGCAGCGTTTGAATTCTTCAGAGgtaggtttagtgtgtggagcatgcctttcccttatctatttagagacagtctgcttttcaatcctcatttttttatatgttaattaatttatgatataat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193350168|gb|FK317830.1|FK317830
EST:     GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGG                         GTTCACTTGGAAAGTCAATGAGGGTGATCCTGAGTTACTTGTCTTCTATTC
genomic: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGGgtaataataa ... gcttcaacagGTTCACTTGGAAAG-CAATGAGGGTGATCCTGAGTTACTTGTCTTC-ATTC
EST: gi|11690379|gb|BF598055.1|BF598055
EST:     CTGGATTCTTCTGGG                         GTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
genomic: CTGGATTCTTCTGGGgtaataataa ... gcttcaacagGTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
EST: gi|207710617|gb|GD691301.1|GD691301
EST:     GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGG                         GTTCACTTGGAAAGCAATGAGGGTGATCCTGAAGTTACTTGTACTTAAACA
genomic: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGGgtaataataa ... gcttcaacagGTTCACTTGGAAAGCAATGAGGGTGATCCTGA-GTTACTTGT-CTT---CA
EST: gi|193658986|gb|FK602111.1|FK602111
EST:     CGTCTGGATTCTTCTGGG                         GTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
genomic: CGTCTGGATTCTTCTGGGgtaataataa ... gcttcaacagGTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
EST: gi|298178150|gb|HO027533.1|HO027533
EST:     GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGG                         GTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
genomic: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGGgtaataataa ... gcttcaacagGTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
EST: gi|298192219|gb|HO036301.1|HO036301
EST:     GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGG                         GTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
genomic: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGGgtaataataa ... gcttcaacagGTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
EST: gi|193625594|gb|FK574740.1|FK574740
EST:     GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGG                         GTTCACTTGGAAAGCAA
genomic: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGGgtaataataa ... gcttcaacagGTTCACTTGGAAAGCAA
EST: gi|151402759|gb|EV272572.1|EV272572
EST:     GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGG                         GTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
genomic: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGGgtaataataa ... gcttcaacagGTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
EST: gi|298189706|gb|HO038109.1|HO038109
EST:     GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGG                         GTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCCA
genomic: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGGgtaataataa ... gcttcaacagGTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCCA
EST: gi|207734694|gb|GD709257.1|GD709257
EST:     GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGG                         GTTCACTTGGAAAGCAATGAGGGTGGTCCTGAGTTACTTGTCTTCATTCCA
genomic: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGGgtaataataa ... gcttcaacagGTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCCA
EST: gi|298164736|gb|HO014381.1|HO014381
EST:     GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGG                         GTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
genomic: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGGgtaataataa ... gcttcaacagGTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
EST: gi|21888807|gb|BQ742020.1|BQ742020
EST:     GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGG                         GTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
genomic: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGGgtaataataa ... gcttcaacagGTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
EST: gi|298180957|gb|HO022396.1|HO022396
EST:     GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGG                         GTTCACTTGGAAAGCAATGAGGGTGGTCCTGAGTTACTTGTCTTCATTCC
genomic: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGGgtaataataa ... gcttcaacagGTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
EST: gi|298192873|gb|HO033307.1|HO033307
EST:     GTGTTAAGTCAGTTTTCAAAGTTTGGGAAGAGCGTCTGGATTCTTCTGGG                         GTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
genomic: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGGgtaataataa ... gcttcaacagGTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
EST: gi|298167595|gb|HO012858.1|HO012858
EST:     GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGG                         GTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
genomic: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGGgtaataataa ... gcttcaacagGTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
EST: gi|192294103|gb|FG986192.1|FG986192
EST:     GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGG                         GTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
genomic: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGGgtaataataa ... gcttcaacagGTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
EST: gi|208199957|gb|GD998630.1|GD998630
EST:     GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGG                         GTTCACTTGGAAAGCAATGAGGG
genomic: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGGgtaataataa ... gcttcaacagGTTCACTTGGAAAGCAATGAGGG
EST: gi|192300261|gb|FG987838.1|FG987838
EST:     GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGG                         GTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
genomic: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGGgtaataataa ... gcttcaacagGTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
EST: gi|298171596|gb|HO021188.1|HO021188
EST:     GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGG                         GTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCT
genomic: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGGgtaataataa ... gcttcaacagGTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
EST: gi|254315527|gb|GR825336.1|GR825336
EST:     GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGG                         GTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
genomic: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGGgtaataataa ... gcttcaacagGTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
EST: gi|298169227|gb|HO020587.1|HO020587
EST:     GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGG                         GTTCACTTGGAAAGCAATGAGGGAGATCCTGAGTTACTTGTCTTCATTCC
genomic: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGGgtaataataa ... gcttcaacagGTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
EST: gi|298189728|gb|HO038131.1|HO038131
EST:     GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGG                         GTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
genomic: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGGgtaataataa ... gcttcaacagGTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
EST: gi|298166356|gb|HO008593.1|HO008593
EST:     GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGG                         GTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
genomic: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGGgtaataataa ... gcttcaacagGTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
EST: gi|298175426|gb|HO015059.1|HO015059
EST:     GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGG                         GTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACCTGTCTTCATTCC
genomic: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGGgtaataataa ... gcttcaacagGTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
EST: gi|298179820|gb|HO025035.1|HO025035
EST:     GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGG                         GTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
genomic: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGGgtaataataa ... gcttcaacagGTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
EST: gi|298196871|gb|HO041614.1|HO041614
EST:     GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGG                         GTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
genomic: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGGgtaataataa ... gcttcaacagGTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
EST: gi|298172694|gb|HO019734.1|HO019734
EST:     GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGG                         GTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
genomic: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGGgtaataataa ... gcttcaacagGTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
EST: gi|20498002|gb|BQ272932.1|BQ272932
EST:     GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGG                         GTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
genomic: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGGgtaataataa ... gcttcaacagGTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
EST: gi|151393588|gb|EV263463.1|EV263463
EST:     GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGG                         GTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
genomic: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGGgtaataataa ... gcttcaacagGTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
EST: gi|298163228|gb|HO011961.1|HO011961
EST:     GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCCGGATTCTTCTGGG                         GTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
genomic: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGGgtaataataa ... gcttcaacagGTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
EST: gi|254342187|gb|GR853324.1|GR853324
EST:     GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGG                         GTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
genomic: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGGgtaataataa ... gcttcaacagGTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
EST: gi|298183628|gb|HO028841.1|HO028841
EST:     GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGG                         GTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
genomic: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGGgtaataataa ... gcttcaacagGTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
EST: gi|208136560|gb|GD934158.1|GD934158
EST:     GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGG                         GTTCACTTGGAAAGCAA
genomic: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGGgtaataataa ... gcttcaacagGTTCACTTGGAAAGCAA
EST: gi|207807095|gb|GD778018.1|GD778018
EST:     GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGG                         GTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTACTTAACATT
genomic: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGGgtaataataa ... gcttcaacagGTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGT-CTT--CATT
EST: gi|51336638|gb|CO980504.1|CO980504
EST:     GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGG                         GTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
genomic: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGGgtaataataa ... gcttcaacagGTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
EST: gi|193567750|gb|FK526425.1|FK526425
EST:     TGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCGTGGG                         GTTCACTTGGAAAGCAATGAGGG
genomic: TGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTC-TGGGgtaataataa ... gcttcaacagGTTCACTTGGAAAGCAATGAGGG
EST: gi|151412116|gb|EV281928.1|EV281928
EST:     GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGG                         GTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
genomic: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGGgtaataataa ... gcttcaacagGTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
EST: gi|298183208|gb|HO028193.1|HO028193
EST:     GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGG                         GTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
genomic: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGGgtaataataa ... gcttcaacagGTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGGgtaataataattcattcacttcaattttaacattcattgtttctgaattatgttatttaacctctagtagtaatggcttcaacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA