1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CTTGGAAATAAGGAAGCAATTGAGAAGGAGCGCGCTCGACTgtaagttcatttttccgttggtgtggttttttggggggttttgtaatgatagggtttgtgcag
species | Glycine max |
transcript | GLYMA13G29120.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CTTGGAAATAAGGAAGCAATTGAGAAGGAGCGCGCTCGACT TGCAGATGAAATGACTAGGGGATACTTCGCTGATATGGCTGAGTTCAAAAAEST: gi|192316411|gb|FK008172.1|FK008172
genomic: CTTGGAAATAAGGAAGCAATTGAGAAGGAGCGCGCTCGACTgtaagttcat ... gtttgtgcagTGCAGATGAAATGACTAGGGGATACTTCGCTGATATGGCTGAGTTCAAAAA
EST: CTTGGAAATAAGGAAGCAATTGAGAAGGAGCGCGCTCGAC- T----ATGAAATGACTAGGGGATACTTCGCTGATATGGCTGAGTTCAAAAAEST: gi|192299154|gb|FG990440.1|FG990440
genomic: CTTGGAAATAAGGAAGCAATTGAGAAGGAGCGCGCTCGACTgtaagttcat ... gtttgtgcagTGCAGATGAAATGACTAGGGGATACTTCGCTGATATGGCTGAGTTCAAAAA
EST: CTTGGAAATAAGGAAGCAATTGAGAAGGAGCGCGCTCGACT TGCAGATGAAATGACTAGGGGATACTTCGCTGATATGGCTGAGTTCAAAAAEST: gi|18039580|gb|BM307874.1|BM307874
genomic: CTTGGAAATAAGGAAGCAATTGAGAAGGAGCGCGCTCGACTgtaagttcat ... gtttgtgcagTGCAGATGAAATGACTAGGGGATACTTCGCTGATATGGCTGAGTTCAAAAA
EST: CTTGGAAATAAGGAAGCAATTGAGAAGGAGCGCGCTCGACT TGCAGATGAAATGACTAGGGGATACTTCGCTGATATGGCTGAGTTCAAAAAEST: gi|207740558|gb|GD713824.1|GD713824
genomic: CTTGGAAATAAGGAAGCAATTGAGAAGGAGCGCGCTCGACTgtaagttcat ... gtttgtgcagTGCAGATGAAATGACTAGGGGATACTTCGCTGATATGGCTGAGTTCAAAAA
EST: CTTGGAAATAAGGAAGCAATTGAGAAGGAGCGCGCTCGACT TGCAGATGAAATGACTAGGGGATACTTCGCTGATATGGEST: gi|192316412|gb|FK008173.1|FK008173
genomic: CTTGGAAATAAGGAAGCAATTGAGAAGGAGCGCGCTCGACTgtaagttcat ... gtttgtgcagTGCAGATGAAATGACTAGGGGATACTTCGCTGATATGG
EST: CTTGGAAATAAGGAAGCAATTGAGAAGGAGCGCGCTCGAC- T----ATGAAATGACTAGGGGATACTTCGCTGATATGGCTGAGTTCAAAAAEST: gi|209715409|gb|BW682127.1|BW682127
genomic: CTTGGAAATAAGGAAGCAATTGAGAAGGAGCGCGCTCGACTgtaagttcat ... gtttgtgcagTGCAGATGAAATGACTAGGGGATACTTCGCTGATATGGCTGAGTTCAAAAA
EST: CTTGGAAATAAGGAAGCAATTGAGAAGGAGCGCGCTCGACT TGCAGATGAAATGACTAGGGGATACTTCGCTGATATGGCTGAGTTCAAAAAEST: gi|298196738|gb|HO041481.1|HO041481
genomic: CTTGGAAATAAGGAAGCAATTGAGAAGGAGCGCGCTCGACTgtaagttcat ... gtttgtgcagTGCAGATGAAATGACTAGGGGATACTTCGCTGATATGGCTGAGTTCAAAAA
EST: CTTGGAAATAAGGAAGCAATTGAGAAGGAGCGCGCTCGACT TGCAGATGAAATGACTAGGGGATACTTCGCTGATATGGCCGAGTTCGAAAAEST: gi|208296178|gb|GE090930.1|GE090930
genomic: CTTGGAAATAAGGAAGCAATTGAGAAGGAGCGCGCTCGACTgtaagttcat ... gtttgtgcagTGCAGATGAAATGACTAGGGGATACTTCGCTGATATGGCTGAGTTCAAAAA
EST: CTTGGAAATAAGGAAGCAATTGAGAAGGAGCGCGCTCGACT TGCAGATGAAATGACTAGGGGATACTTCGCTGATATGGCTGAGTTCAAAAAEST: gi|192318819|gb|FK011433.1|FK011433
genomic: CTTGGAAATAAGGAAGCAATTGAGAAGGAGCGCGCTCGACTgtaagttcat ... gtttgtgcagTGCAGATGAAATGACTAGGGGATACTTCGCTGATATGGCTGAGTTCAAAAA
EST: CTTGGAAATAAGGAAGCAATTGAGAAGGAGCGCGCTCGAC- T----ATGAAATGACTAGGGGATACTTCGCTGATATGGCTGAGTTCAAAAA
genomic: CTTGGAAATAAGGAAGCAATTGAGAAGGAGCGCGCTCGACTgtaagttcat ... gtttgtgcagTGCAGATGAAATGACTAGGGGATACTTCGCTGATATGGCTGAGTTCAAAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTGGAAATAAGGAAGCAATTGAGAAGGAGCGCGCTCGACTgtaagttcatttttccgttggtgtggttttttggggggttttgtaatgatagggtttgtgcag
- - - - AAGGAA
- - - - - - AAGCAA
- - - - - - - - - - - - AAGGAG