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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGCCAGGTACTATCATTGCCATGGGGAGGCTCAACAGACCTAGCATTATGGTTTATGGCGGGACTATAAAAgtaaattcacttgaattttgatttttttaattattaataatttactgtgagctgaatgtgcgagtgctactcatgaaccagttttgcagttaatcagtga...

Basic information

species Glycine max
transcript GLYMA13G27810.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207789913|gb|GD761260.1|GD761260
EST:     AGGCTCAACAGACCTAGCATTATGGTTTATGGCGGGACTAATAAAA                         CCTGGTCATTTTGAGGGTAACACGTTTGACATAGTGTCTGCCTTTCAG
genomic: AGGCTCAACAGACCTAGCATTATGGTTTATGGCGGGACT-ATAAAAgtaaattcac ... tttttttcagCCTGGTCATTTTGAGGGTAACACGTTTGACATAGTGTCTGCCTTTCAG
EST: gi|193652196|gb|FK597788.1|FK597788
EST:     GGCGGGACTATAAAA                         CCTGGTCATTTTGAGGGTAACACGTTTGACATAGTGTCTGCCTTTCAG
genomic: GGCGGGACTATAAAAgtaaattcac ... tttttttcagCCTGGTCATTTTGAGGGTAACACGTTTGACATAGTGTCTGCCTTTCAG
EST: gi|208073181|gb|GD869870.1|GD869870
EST:     TGGGGAGGCTCAACAGACCTAGCATTATGGTTTATGGCGGGACTATAAAA                         CCTGGTCATTTTGAGGGTAACACGTTTGACATAGTGTCTGCCTTTCAG
genomic: TGGGGAGGCTCAACAGACCTAGCATTATGGTTTATGGCGGGACTATAAAAgtaaattcac ... tttttttcagCCTGGTCATTTTGAGGGTAACACGTTTGACATAGTGTCTGCCTTTCAG
EST: gi|193569419|gb|FK527178.1|FK527178
EST:     TGGGGAGGCTCAACAGACCTAGCATTATGGTTTATGGCGGGACTATAAAA                         CCTGGTCATTTTGAGGGTAA
genomic: TGGGGAGGCTCAACAGACCTAGCATTATGGTTTATGGCGGGACTATAAAAgtaaattcac ... tttttttcagCCTGGTCATTTTGAGGGTAA
EST: gi|208159300|gb|GD953831.1|GD953831
EST:     TTATGGTTTATGGCGGGACTATAAAA                         CCTGGTCATTTTGAGGGTAACACGTTTGACATAGTGTCTGCCTTTCAG
genomic: TTATGGTTTATGGCGGGACTATAAAAgtaaattcac ... tttttttcagCCTGGTCATTTTGAGGGTAACACGTTTGACATAGTGTCTGCCTTTCAG
EST: gi|193489206|gb|FK457155.1|FK457155
EST:     TGGGGAGGCTCAACAGACCTAGCATTATGGTTTATGGCGGGACTATAAAA                         CCTGGTCATTTTGAGGGTAACACGTTTGACATAGTGTCTGCCTTTCAG
genomic: TGGGGAGGCTCAACAGACCTAGCATTATGGTTTATGGCGGGACTATAAAAgtaaattcac ... tttttttcagCCTGGTCATTTTGAGGGTAACACGTTTGACATAGTGTCTGCCTTTCAG
EST: gi|193651463|gb|FK594634.1|FK594634
EST:     TGGGGAGGCTCAACAGACCTAGCATTATGGTTTATGGCGGGACTATAAAA                         CCTGGTCATTTTGAGGGTAA
genomic: TGGGGAGGCTCAACAGACCTAGCATTATGGTTTATGGCGGGACTATAAAAgtaaattcac ... tttttttcagCCTGGTCATTTTGAGGGTAA
EST: gi|208114414|gb|GD908945.1|GD908945
EST:     TGGGGAGGCTCAACAGACCTAGCATTATGGTTTATGGCGGGACTACAAAA                         CCTGGTCATTTTGAGGGTAACACGTTTGACATAGTGTCTGCCTTTCAG
genomic: TGGGGAGGCTCAACAGACCTAGCATTATGGTTTATGGCGGGACTATAAAAgtaaattcac ... tttttttcagCCTGGTCATTTTGAGGGTAACACGTTTGACATAGTGTCTGCCTTTCAG
EST: gi|208184033|gb|GD981919.1|GD981919
EST:     GGCGGGACTATAAAA                         CCTGGTCATTTTGAGGGTAACACGTTTGACATAGTGTCTGCCTTTCAG
genomic: GGCGGGACTATAAAAgtaaattcac ... tttttttcagCCTGGTCATTTTGAGGGTAACACGTTTGACATAGTGTCTGCCTTTCAG
EST: gi|208076499|gb|GD873930.1|GD873930
EST:     TGGGGAGGCTCAACAGACCTAGCATTATGGTTTATGGCGGGACTATAAAA                         CCTGGTCATTTTGAGGGTAACACGTTTGACATAGTGTCTGCCTTTCAG
genomic: TGGGGAGGCTCAACAGACCTAGCATTATGGTTTATGGCGGGACTATAAAAgtaaattcac ... tttttttcagCCTGGTCATTTTGAGGGTAACACGTTTGACATAGTGTCTGCCTTTCAG
EST: gi|208123696|gb|GD922358.1|GD922358
EST:     GACCTAGCATTATTGGTTTATGGCGGGACTATAAAA                         CCTGGTCATTTTGAGGGTAACACGTTTGACATAGTGTCTGCCTTTCAG
genomic: GACCTAGCATTA-TGGTTTATGGCGGGACTATAAAAgtaaattcac ... tttttttcagCCTGGTCATTTTGAGGGTAACACGTTTGACATAGTGTCTGCCTTTCAG
EST: gi|207737749|gb|GD716437.1|GD716437
EST:     GGACTATAAAA                         CCTTGGTTCTATTTTTGAGGGTAACACGTTTGACATAGTGTCTGCCTTTCA
genomic: GGACTATAAAAgtaaattcac ... tttttttcagCC-TGG-TC-A-TTTTGAGGGTAACACGTTTGACATAGTGTCTGCCTTTCA
EST: gi|193659033|gb|FK606834.1|FK606834
EST:     TGGGGAGGCTCAACAGACCTAGCATTATGGTTTATGGCGGGACTATAAAA                         CCTGGTCATTT-GAGG
genomic: TGGGGAGGCTCAACAGACCTAGCATTATGGTTTATGGCGGGACTATAAAAgtaaattcac ... tttttttcagCCTGGTCATTTTGAGG
EST: gi|207726203|gb|GD701491.1|GD701491
EST:     TGGGGAGGCTCAACAGACCTAGCATTATGGTTTATGGCGGGACTATAAAA                         CCTGGTCATTTTGAGGGTAACACGTTTGACATAGTGTC
genomic: TGGGGAGGCTCAACAGACCTAGCATTATGGTTTATGGCGGGACTATAAAAgtaaattcac ... tttttttcagCCTGGTCATTTTGAGGGTAACACGTTTGACATAGTGTC