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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGAGGATTCACGAGGATTCTACATTCTGGAAATCCTGACAACTTGATGGATGAAATTCCTACTGTTGTGGTTGATCCCCTTCCAGCAGGTTTGGATCGGgtgagtttactgcaacttttcattatatttttttttatgttgtttgctaattccttatgtttttcagccgattggatttatagtttataatgtttctgtt...

Basic information

species Glycine max
transcript GLYMA13G26610.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G26610.1 (Glycine max), 5'ss of exon 2
lower sequence: AT5G13500.1 (Arabidopsis thaliana), 5'ss of exon 2
GGGAGGATTCACGAGGATTCTACATTCTGGAAATCCTGACAACTTGATGGATGAAATTCCTACTGTTGTGGTTGATCCCCTTCCAGCAGGTTTGGATCGGgtgag---tttactgcaacttttcattatatttttttttatgttgtttgctaattccttatgtttttcagccgattggatttatagt-ttataatgtttctgtt--
||| || |||||  | ||| | ||||| || ||| |||| ||||||||||||||||| || ||  ||||||||||||| |||||  ||||| | |||||||| ||   |||  |   | |     || |   |||  |     | |||| | ||   |||  |   | |  |  |    ||| || | || |||| ||    ||  
GGGTGGCTTCACCCGTATTTTGCATTCCGGTAATTCTGATAACTTGATGGATGAAATACCCACATTTGTGGTTGATCCTCTTCCTCCAGGTCTTGATCGGgtaagaatttttattttattcccgtttctccatttggtctcactttttgttgatggttta--tcactgattcactcttttttgtaatcttgtaatcttgtatttag

upper sequence: GLYMA13G26610.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv13s0084g00830.t01 (Vitis vinifera), 5'ss of exon 1
GGGAGGATTCACGAGGATTCTACATTCTGGAAATCCTGACAACTTGATGGATGAAATTCCTACTGTTGTGGTTGATCCCCTTCCAGCAGGTTTGGATCGGgtgag---tttactgcaacttttcattatattt-ttttttatgttgtttgctaattccttatgtt-tttcagccgattggatttatagtttataatgtttctgtt
||||||||| || |||||||| ||||| |||| |||||| ||| ||||||| || ||||||||| ||||||||||||| ||||| ||||||||||||||||||||   | | || |   | ||    || |||  || |||| || |||| |   |       || ||| ||    |||||   || |     || | | |    
GGGAGGATTTACAAGGATTCTGCATTCAGGAAGTCCTGATAACCTGATGGAAGAGATTCCTACTTTTGTGGTTGATCCTCTTCCTGCAGGTTTGGATCGGgtgagaaatcttcttctgttattatacatctttgcttcttatattctttgttgtataacggcattcttttaggttgttggaaa-attgcaagcaa-gctcca---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192309521|gb|FG999860.1|FG999860
EST:     ATGAAATTCCTACTGTTGTGGTTGATCCCCTTCCAGCAGGTTTGGATCGG                         GGATACATTGTTCTGAATAGGCCATGGGCCTTTGTTCAGTGGCTGGAAAAG
genomic: ATGAAATTCCTACTGTTGTGGTTGATCCCCTTCCAGCAGGTTTGGATCGGgtgagtttac ... atgtttgcagGGATACATTGTTCTGAATAGGCCATGGGCCTTTGTTCAGTGGCTGGAAAAG