Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcatttcactttctctgcaattttcatttgtattactcttctgattgtgtgtcgtgtgttgtgcttagaggaaaaaccgttgctttttaagtgggg...

Basic information

species Glycine max
transcript GLYMA13G24630.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G24630.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os03g27260.1 (Oryza sativa), 5'ss of exon 2
TTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcatttcactttctctgcaattttcatttgtattactcttctgattgtgtgtcgtgtgttgtgcttagaggaaaaaccg-ttgctttttaagtgggg
|||||||| || || || ||||| ||||||||||||||||| || ||||||||||||| |||||||| |    | | | ||||||     | |   |  |  |    |    | || |||  |  | |  ||| | | |  ||    | |||     |  ||    
TTCAACATCGCCAACCCGACCACCGGGTGCCAGAAGAAGCTCGAGATCGATGACGACCAGAAGCTgtgagtgctcctccttctctctctctcttgatgctgatctgttctgaaatgcgtggag-atctcttgcatcgtgttaatctagcttgtccgctcggtcctt

upper sequence: GLYMA13G24630.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os07g42950.1 (Oryza sativa), 5'ss of exon 2
TTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcatt-tcactttctctgcaattttcatttgtattactct---tctgattgtgtgtcgtgtgttgtgcttagaggaaaaaccgttgctttttaagtgggg
|||||||| || || || ||||| ||||||||||||||||| || ||||||||||||| |||||||| |  ||| || |   | || |    ||  |||   || | |    |  ||  | |||  ||  || |||   ||  |||  | ||       ||  ||    
TTCAACATCGCGAACCCGACCACCGGGTGCCAGAAGAAGCTCGAGATCGATGACGACCAGAAGCTgtgagtattctcgccgccgctcccccgtttgtttcgtttccccaatattagagagagtggtgttggtagtggcaagccgaatcagcgcgaacccttgtgt----

upper sequence: GLYMA13G24630.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G054136_T02 (Zea mays), 5'ss of exon 2
TTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcatttcactttctctgc--aattttcatttgt-attactcttctgattgtgtgtcgtgtgttgtgcttagaggaaaaaccgttgctttttaagtgggg
|||||||| || || ||  |||| |||||||| ||||||||||||||||||||||||| |||||||| |   |||| | | |||       | |  |||| |  || |||||      ||| |    ||||| ||||| |||   |    || |||  |   |     
TTCAACATCGCGAACCCTTCCACCGGGTGCCAAAAGAAGCTGGAAATCGATGACGACCAGAAGCTgtgagtgtttcgcgtcctccatctgctctgtatttttcgtttctcttagatccgtgggagtggtgttttgcttcgagcccactttgtagctgatggtgcc---

upper sequence: GLYMA13G24630.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G054136_T01 (Zea mays), 5'ss of exon 2
TTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcatttcactttct----ctgcaattttcatttgtattactcttctgattgtgtgtcgtgtgttgtgcttagaggaaaaaccgttgctttttaagtgggg
|||||||| || || ||  |||| |||||||| ||||||||||||||||||||||||| |||||||| |   |||| | | ||    ||||  | |   |||   || |||||     |||| |    ||||| ||||| |||   |    || |||  |   |     
TTCAACATCGCGAACCCTTCCACCGGGTGCCAAAAGAAGCTGGAAATCGATGACGACCAGAAGCTgtgagtgtttcgcgtcctccatctgctctgtattttttcgtttctcttagatctgtgggagtggtgttttgcttcgagcccactttgtagctgatggtgc----

upper sequence: GLYMA13G24630.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM5G851698_T01 (Zea mays), 5'ss of exon 2
TTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcatttcactttctctgcaattttcatttgtattactcttctgattgtgtgtcgtgtgttgtgcttagaggaaaaaccgttgctttt--taagtgggg
|||||||| || || ||  | || |||||||||||||||||||||||||||||||||| ||| |||| |   ||  || ||| ||      |   | | | |  |||||       ||||    ||||| | || ||| |      ||| ||| ||  ||||  |  
TTCAACATCGCGAACCCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCAGAAACTgtgagtgttcgacattccctatttgctctgtatttttgtctcttagatccatgtgagtggtgttct-ctcagatgctct-tcgtagctgttgttaagacgat

upper sequence: GLYMA13G24630.1 (Glycine max), 5'ss of exon 2
lower sequence: AT4G31700.1 (Arabidopsis thaliana), 5'ss of exon 2
TTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcatttcactttctctgcaattttcatttgtattactcttctgattgtgtgtcgtgtgttgtgcttagaggaaaaaccgttgctttttaagtgggg--------
|||||| |||| ||||| || ||||| |||||||||||||| || ||||| || |||| ||| ||||||  ||||  ||| |||||    |||||| |  ||| |  || | || |  | |   ||| |  | |   ||    |    ||| | |||   |            
TTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGACGATGACCAGAAACTgtaag-attttgctt-ctctg----tttcatcttcatt-catttttaatag-atatttcgtgctaggttgccagatctattgattggtgtttgtatatatcactgtta

upper sequence: GLYMA13G24630.1 (Glycine max), 5'ss of exon 2
lower sequence: PP1S31_322V6.1 (Physcomitrella patens), 5'ss of exon 2
TTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcatttcactttctctgcaattttcatttgtattactcttctgattgtgtgtcgtgtgttgtgct-tagaggaaaaaccgttgctttttaagtgggg
 |||| || || ||||||||||| ||||||||||||||| | || ||||||||||||   ||||||| |  | | |       |||   | |  || ||   |   |||    |||| |     | ||   |    ||    | ||   | |  |||   |  || 
CTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCTgtgagtagtgccgcaatgctgtt-tgtcaatgtgccgtgggcttaatgttgttttataagggtccggtcacagtacgagaatattagggtttagtgctggt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17401349|gb|BM178131.1|BM178131
EST:     CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT                         TCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
genomic: CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcattt ... atatttgcagTCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
EST: gi|208332504|gb|GE126557.1|GE126557
EST:     CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT                         TCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
genomic: CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcattt ... atatttgcagTCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
EST: gi|298193160|gb|HO033594.1|HO033594
EST:     CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT                         TCGGGCATTTTGGGACAAGAGGATCACCCAGGAGGTCCTTGGTGACGCCCT
genomic: CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcattt ... atatttgcagTCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
EST: gi|298181810|gb|HO025985.1|HO025985
EST:     CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT                         TCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
genomic: CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcattt ... atatttgcagTCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
EST: gi|208127723|gb|GD924881.1|GD924881
EST:     CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT                         TCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
genomic: CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcattt ... atatttgcagTCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
EST: gi|19345970|gb|BM890850.1|BM890850
EST:     AGAAGAAGCTGGAAATCGATGACGACCTGAAGCT                         TCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
genomic: AGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcattt ... atatttgcagTCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
EST: gi|298199594|gb|HO043471.1|HO043471
EST:     CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT                         TCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
genomic: CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcattt ... atatttgcagTCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
EST: gi|151395180|gb|EV265051.1|EV265051
EST:     CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT                         TCGGGCATTTTGGGACAAGAGGACCTCCCAGGAGGTCCTTGGTGACGCCCT
genomic: CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcattt ... atatttgcagTCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
EST: gi|254321711|gb|GR825028.1|GR825028
EST:     CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT                         TCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
genomic: CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcattt ... atatttgcagTCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
EST: gi|193637975|gb|FK585791.1|FK585791
EST:     CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT                         TCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
genomic: CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcattt ... atatttgcagTCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
EST: gi|13181264|gb|BG352613.1|BG352613
EST:     CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT                         TCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
genomic: CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcattt ... atatttgcagTCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
EST: gi|151400718|gb|EV270532.1|EV270532
EST:     CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT                         TCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
genomic: CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcattt ... atatttgcagTCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
EST: gi|10710672|gb|BF010390.1|BF010390
EST:     CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT                         TCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
genomic: CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcattt ... atatttgcagTCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
EST: gi|208227537|gb|GE022762.1|GE022762
EST:     CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT                         TCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
genomic: CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcattt ... atatttgcagTCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
EST: gi|207701951|gb|GD683503.1|GD683503
EST:     CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT                         TCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
genomic: CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcattt ... atatttgcagTCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
EST: gi|208306116|gb|GE105805.1|GE105805
EST:     CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT                         TCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCTTTGGTGACGCCCT
genomic: CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcattt ... atatttgcagTCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
EST: gi|298187081|gb|HO034230.1|HO034230
EST:     CCACCACTGGGTGGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT                         TCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
genomic: CCACCACTGGGT-GCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcattt ... atatttgcagTCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
EST: gi|13789946|gb|BG652537.1|BG652537
EST:     CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT                         TCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
genomic: CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcattt ... atatttgcagTCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
EST: gi|208069774|gb|GD867903.1|GD867903
EST:     CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT                         TCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
genomic: CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcattt ... atatttgcagTCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
EST: gi|209707806|gb|BW683702.1|BW683702
EST:     CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT                         TCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
genomic: CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcattt ... atatttgcagTCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
EST: gi|207834771|gb|GD806448.1|GD806448
EST:     CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT                         TCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
genomic: CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcattt ... atatttgcagTCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
EST: gi|151401801|gb|EV271614.1|EV271614
EST:     CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT                         TCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
genomic: CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcattt ... atatttgcagTCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
EST: gi|298167226|gb|HO010665.1|HO010665
EST:     CCACCACTGGGTGGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT                         TCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
genomic: CCACCACTGGGT-GCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcattt ... atatttgcagTCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
EST: gi|209718263|gb|BW677487.1|BW677487
EST:     CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT                         TCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
genomic: CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcattt ... atatttgcagTCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
EST: gi|16997182|gb|BM086554.1|BM086554
EST:     CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT                         TCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
genomic: CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcattt ... atatttgcagTCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
EST: gi|208102096|gb|GD899077.1|GD899077
EST:     TGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT                         TCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
genomic: TGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcattt ... atatttgcagTCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
EST: gi|254346474|gb|GR856196.1|GR856196
EST:     CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT                         TCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
genomic: CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcattt ... atatttgcagTCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
EST: gi|193457350|gb|FK423144.1|FK423144
EST:     CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT                         TCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
genomic: CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcattt ... atatttgcagTCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
EST: gi|298172238|gb|HO021830.1|HO021830
EST:     CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT                         TCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
genomic: CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcattt ... atatttgcagTCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
EST: gi|192322367|gb|FK014608.1|FK014608
EST:     CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT                         TCGGGCATTTTGGGACAAGAGGATCTCCCAGGTGGTCCTTGGTGACGCCCT
genomic: CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcattt ... atatttgcagTCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
EST: gi|298186880|gb|HO033979.1|HO033979
EST:     CCCACCACTGTGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT                         TCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
genomic: CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcattt ... atatttgcagTCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
EST: gi|298182877|gb|HO031612.1|HO031612
EST:     CCGCCACTGGGTGGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT                         TCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
genomic: CCACCACTGGGT-GCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcattt ... atatttgcagTCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
EST: gi|298180288|gb|HO025489.1|HO025489
EST:     CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT                         TCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
genomic: CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcattt ... atatttgcagTCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
EST: gi|298176490|gb|HO026725.1|HO026725
EST:     CCACCACTGGGTGGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT                         TCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
genomic: CCACCACTGGGT-GCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcattt ... atatttgcagTCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
EST: gi|151409894|gb|EV279702.1|EV279702
EST:     CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT                         TCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
genomic: CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcattt ... atatttgcagTCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
EST: gi|22523471|gb|BU082282.1|BU082282
EST:     CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT                         TCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
genomic: CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcattt ... atatttgcagTCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
EST: gi|254327970|gb|GR834935.1|GR834935
EST:     CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT                         TCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
genomic: CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcattt ... atatttgcagTCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
EST: gi|298187656|gb|HO034805.1|HO034805
EST:     CCACCACTGGGTGGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT                         TCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
genomic: CCACCACTGGGT-GCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcattt ... atatttgcagTCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
EST: gi|192329629|gb|FK021915.1|FK021915
EST:     CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT                         TCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
genomic: CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcattt ... atatttgcagTCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
EST: gi|193373433|gb|FK340205.1|FK340205
EST:     CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT                         TCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
genomic: CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcattt ... atatttgcagTCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
EST: gi|209697660|gb|BW655509.1|BW655509
EST:     CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT                         TCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
genomic: CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcattt ... atatttgcagTCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
EST: gi|208215523|gb|GE015506.1|GE015506
EST:     CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT                         TCGGGCATTTTGGGACAAGAGGATCTCCCAGGAAGGTACCTTGGTGACGCC
genomic: CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcattt ... atatttgcagTCGGGCATTTTGGGACAAGAGGATCTCCCAGGA-GGT-CCTTGGTGACGCC
EST: gi|298171153|gb|HO016185.1|HO016185
EST:     CCCACCACTGGGTGCCAGAGGAAGCTGGAAATCGATGACGACCTGAAGCT                         TCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
genomic: CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcattt ... atatttgcagTCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
EST: gi|298168655|gb|HO009585.1|HO009585
EST:     CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT                         TCAGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTCGGTGACGCCCT
genomic: CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcattt ... atatttgcagTCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
EST: gi|18040373|gb|BM308667.1|BM308667
EST:     CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT                         TCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
genomic: CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcattt ... atatttgcagTCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
EST: gi|193646588|gb|FK591311.1|FK591311
EST:     CCCTCCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT                         TCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT
genomic: CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcattt ... atatttgcagTCGGGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGACGCCCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcatttcactttctctgcaattttcatttgtattactcttctgattgtgtgtcgtgtgttgtgcttagaggaaaaaccgttgctttttaagtgggg

- - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaaaaac