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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAATGCAACGTCTAATTCAAATTTTGATGGGAAAGGAACTTACTTGATCTTCAATGTCGGGGATGCAATTTTTATAAGTGATTTGAATTCACAAGACAAGgtataatgatcgggttagggtggatggattgtaaggattttgactttattcatgagaggtttcttgttcaatgtag

Basic information

species Glycine max
transcript GLYMA13G20240.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G20240.1 (Glycine max), 5'ss of exon 2
lower sequence: AT2G37160.1 (Arabidopsis thaliana), 5'ss of exon 2
TAATGCAACGTCTAATTCAAATTTTGATGGGAAAGGAACTTACTTGATCTTCAATGTCGGGGATGCAATTTTTATAAGTGATTTGAATTCACAAGACAAGgtataatgatcgggttagggtggatggattgtaaggattttgactttattcatgagaggtttcttgt-tcaatgtag---------------
||   || |  ||||| ||||||| ||||||||||||||||||||  |||||||||| || ||||| |||||||| ||||| ||||| || || |||||||||   | | |   |      |  | | ||        ||||| || ||      |  |||| |    |  |||                  
TACCTCAGCTACTAATACAAATTTCGATGGGAAAGGAACTTACTTAGTCTTCAATGTTGGTGATGCTATTTTTATTAGTGACTTGAACTCGCAGGACAAGgtaatcttacc---tctactcgttttgttttcttaagatttgatttgatctgctggttgtttgtcacatttatgagaaattatttgatttag

upper sequence: GLYMA13G20240.1 (Glycine max), 5'ss of exon 2
lower sequence: AT3G53390.1 (Arabidopsis thaliana), 5'ss of exon 2
TAATGCAACGTCTAATTCAAATTTTGATGGGAAAGGAACTTACTTGATCTTCAATGTCGGGGATGCAATTTTTATAAGTGATTTGAATTCACAAGACAAGgta--------------taatgatcgggttaggg---tggatggattgtaaggattttgactttattcatgaga----ggttt------cttgttcaatgtag
|| | | | | | ||| | ||||||||||||||||||||||||||| ||||||||||  | ||||| ||||||||  |||| ||||| |||||||| ||||||              |  |  ||   |||| |   ||| || | |||   | ||||   ||| ||   ||      |||||      ||| ||  ||||||
TACTTCGATGACAAATACGAATTTTGATGGGAAAGGAACTTACTTGGTCTTCAATGTGAGTGATGCTATTTTTATCTGTGACTTGAACTCACAAGAAAAGgtaatttcttcttttctttgttttccttttagtgatttggctgtaatgttctgttttttgttttgttttggaagtaatggtttaggaaacttctttgatgtag

upper sequence: GLYMA13G20240.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv08s0040g01960.t01 (Vitis vinifera), 5'ss of exon 2
TAATGCAACGTCTAATTCAAATTTTGATGGGAAAGGAACTTACTTGATCTTCAATGTCGGGGATGCAATTTTTATAAGTGATTTGAATTCACAAGACAAGgtataatgat-----cgggttagggtg--gatggattgtaaggattttg------actttattcatgagaggtttcttgttcaatgtag
|||| | ||   || ||| ||||||||||||||||| ||||||||||| |||||||| ||||||||||| |||||  ||||||||||| | ||||| ||||||   ||||     | || |  |||    ||  ||  |     | |||      | ||   |  |||||||||| || || |||||||
TAATCCGACAGGTACTTCCAATTTTGATGGGAAAGGGACTTACTTGATTTTCAATGTTGGGGATGCAATATTTATCTGTGATTTGAATACGCAAGATAAGgtaatttgatgttttctggctgcggttttaatcaataattcatgtcttgcgttggaattggattttgagaggtttgttttttaatgtag