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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTATGGAATGGATCACGAGCGTTACGTTTCTACCCTCGCCACCAAGGGAGTTGGTCACCTCGTTCGTAAGGGCACTGGTGGACGATCCTCCGTCAGgtttacctcattccttcttcattctcgctctaggtttttttttttgttttttggattttcgtaatgagattacttgatttatcattattgttggttgagg...

Basic information

species Glycine max
transcript GLYMA13G18950.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209703775|gb|BW670711.1|BW670711
EST:     GGCGTTGGTCACCTCGTTCGTAAGGGCACTGGTGGACGATCCTCCGTCAG                         TGGCATTATTGCTACAGTATTTGGGGCAACTGGATTCTTAGGTCGTTATGT
genomic: GGAGTTGGTCACCTCGTTCGTAAGGGCACTGGTGGACGATCCTCCGTCAGgtttacctca ... ctttttgcagTGGCATTATTGCTACAGTATTTGGGGCAACTGGATTCTTAGGTCGTTATGT
EST: gi|151400304|gb|EV270118.1|EV270118
EST:     GGAGTTGGTCACCTCGTTCGTAAGGGCACTGGTGGACGATCCTCCGTCAG                         TGGCATTATTGCTACAGTATTTGGGGCAACTGGATTCTTAGGTCGTTATGT
genomic: GGAGTTGGTCACCTCGTTCGTAAGGGCACTGGTGGACGATCCTCCGTCAGgtttacctca ... ctttttgcagTGGCATTATTGCTACAGTATTTGGGGCAACTGGATTCTTAGGTCGTTATGT
EST: gi|298181570|gb|HO025745.1|HO025745
EST:     GGAGTTGGTCACCTCGTTCGTAAGGGCACTGGTGGACGATCCTCCGTCAG                         TGGCATTATTGCTACAGTATTTGGGGCAACTGGATTCTTAGGTCGTTATGT
genomic: GGAGTTGGTCACCTCGTTCGTAAGGGCACTGGTGGACGATCCTCCGTCAGgtttacctca ... ctttttgcagTGGCATTATTGCTACAGTATTTGGGGCAACTGGATTCTTAGGTCGTTATGT
EST: gi|192301726|gb|FG997640.1|FG997640
EST:     GGAGTTGGTCACCTCGTTCGTAAGGGCACTGGTGGACGATCCTCCGTCAG                         TGGCATTATTGCTACAGTATTTGGGGCAACTGGATTCTTAGGTCGTTATGT
genomic: GGAGTTGGTCACCTCGTTCGTAAGGGCACTGGTGGACGATCCTCCGTCAGgtttacctca ... ctttttgcagTGGCATTATTGCTACAGTATTTGGGGCAACTGGATTCTTAGGTCGTTATGT
EST: gi|298190384|gb|HO032505.1|HO032505
EST:     GGAGTTGGTCACCTCGTTCGTAAGGGCACTGGTGGACGATCCTCCGTCAG                         TGGCATTATTGCTACAGTATTTGGGGCAACTGGATTCTTAGGTCGTTATGT
genomic: GGAGTTGGTCACCTCGTTCGTAAGGGCACTGGTGGACGATCCTCCGTCAGgtttacctca ... ctttttgcagTGGCATTATTGCTACAGTATTTGGGGCAACTGGATTCTTAGGTCGTTATGT
EST: gi|151398563|gb|EV268434.1|EV268434
EST:     GGAGTTGGTCACCTCGTTCGTAAGGGCACTGGTGGACGATCCTCCGTCAG                         TGGCATTATTGCTACAGTATTTGGGGCAACTGGATTCTTAGGTCGTTATGT
genomic: GGAGTTGGTCACCTCGTTCGTAAGGGCACTGGTGGACGATCCTCCGTCAGgtttacctca ... ctttttgcagTGGCATTATTGCTACAGTATTTGGGGCAACTGGATTCTTAGGTCGTTATGT
EST: gi|298192730|gb|HO033164.1|HO033164
EST:     GGAGTTGGTCACCTCGTTCGTAAGGGCACTGGTGGATGATCCTCCGTCAG                         TGGCATTATTGCTACAGTATTTGGGGCAACTGGATTCTTAGGTCGTTATGT
genomic: GGAGTTGGTCACCTCGTTCGTAAGGGCACTGGTGGACGATCCTCCGTCAGgtttacctca ... ctttttgcagTGGCATTATTGCTACAGTATTTGGGGCAACTGGATTCTTAGGTCGTTATGT
EST: gi|151403355|gb|EV273165.1|EV273165
EST:     GGAGTTGGTCACCTCGTTCGTAAGGGCACTGGTGGACGATCCTCCGTCAG                         TGGCATTATTGCTACAGTATTTGGGGCAACTGGATTCTTAGGTCGTTATGT
genomic: GGAGTTGGTCACCTCGTTCGTAAGGGCACTGGTGGACGATCCTCCGTCAGgtttacctca ... ctttttgcagTGGCATTATTGCTACAGTATTTGGGGCAACTGGATTCTTAGGTCGTTATGT
EST: gi|209718615|gb|BW662707.1|BW662707
EST:     GGCGTTGGTCACCTCGTTCGTAAGGGCACTGGTGGACGATCCTCCGTCAG                         TGGCATTATTGCTACAGTATTTGGGGCAACTGGATTCTTAGGTCGTTATGT
genomic: GGAGTTGGTCACCTCGTTCGTAAGGGCACTGGTGGACGATCCTCCGTCAGgtttacctca ... ctttttgcagTGGCATTATTGCTACAGTATTTGGGGCAACTGGATTCTTAGGTCGTTATGT
EST: gi|254347887|gb|GR854136.1|GR854136
EST:     GGAGTTGGTCACCTCGTTCGTAAGGGCACTGGTGGACGATCCTCCGTCAG                         TGGCATTATTGCTACAGTATTTGGGGCAACTGGATTCTTAGGTCGTTATGT
genomic: GGAGTTGGTCACCTCGTTCGTAAGGGCACTGGTGGACGATCCTCCGTCAGgtttacctca ... ctttttgcagTGGCATTATTGCTACAGTATTTGGGGCAACTGGATTCTTAGGTCGTTATGT
EST: gi|213595497|gb|DB966551.1|DB966551
EST:     GGCGTTGGTCACCTCGTTCGTAAGGGCACTGGTGGACGATCCTCCGTCAG                         TGGCATTATTGCTACAGTATTTGGGGCAACTGGATTCTTAGGTCGTTATGT
genomic: GGAGTTGGTCACCTCGTTCGTAAGGGCACTGGTGGACGATCCTCCGTCAGgtttacctca ... ctttttgcagTGGCATTATTGCTACAGTATTTGGGGCAACTGGATTCTTAGGTCGTTATGT
EST: gi|192312569|gb|FK005027.1|FK005027
EST:     GGAGTTGGTCACCTCGTTCGTAAGGGCACTGGTGGACGATCCTCCGTCAG                         TGGCATTATAGCTACAGTATTTGGGGCAACTGGATTCTTAGGTCGTTATGT
genomic: GGAGTTGGTCACCTCGTTCGTAAGGGCACTGGTGGACGATCCTCCGTCAGgtttacctca ... ctttttgcagTGGCATTATTGCTACAGTATTTGGGGCAACTGGATTCTTAGGTCGTTATGT
EST: gi|213591304|gb|DB959874.1|DB959874
EST:     GGCGTTGGTCACCTCGTTCGTAAGGGCACTGGTGGACGATCCTCCGTCAG                         TGGCATTATTGCTACAGTATTTGGGGCAACTGGATTCTTAGGTCGTTATGT
genomic: GGAGTTGGTCACCTCGTTCGTAAGGGCACTGGTGGACGATCCTCCGTCAGgtttacctca ... ctttttgcagTGGCATTATTGCTACAGTATTTGGGGCAACTGGATTCTTAGGTCGTTATGT
EST: gi|151397287|gb|EV267160.1|EV267160
EST:     GGAGTTGGTCACCTCGTTCGTAAGGGCACTGGTGGACGATCCTCCGTCAG                         TGGCATTATTGCTACAGTATTTGGGGCAACTGGATTCTTAGGTCGTTATGT
genomic: GGAGTTGGTCACCTCGTTCGTAAGGGCACTGGTGGACGATCCTCCGTCAGgtttacctca ... ctttttgcagTGGCATTATTGCTACAGTATTTGGGGCAACTGGATTCTTAGGTCGTTATGT
EST: gi|298184881|gb|HO030094.1|HO030094
EST:     GGAGTTGGTCACCTCGTTCGTAAGGGCACTGGTGGACGATCCTCCGTCAG                         TGGCATTATTGCTACAGTATTTGGGGCAACTGGATTCTTAGGTCGTTATGT
genomic: GGAGTTGGTCACCTCGTTCGTAAGGGCACTGGTGGACGATCCTCCGTCAGgtttacctca ... ctttttgcagTGGCATTATTGCTACAGTATTTGGGGCAACTGGATTCTTAGGTCGTTATGT
EST: gi|209707137|gb|BW656754.1|BW656754
EST:     GGCGTTGGTCACCTCGTTCGTAAGGGCACTGGTGGACGATCCTCCGTCAG                         TGGCATTATTGCTACAGTATTTGGGGCAACTGGATTCTTAGGTCGTTATGT
genomic: GGAGTTGGTCACCTCGTTCGTAAGGGCACTGGTGGACGATCCTCCGTCAGgtttacctca ... ctttttgcagTGGCATTATTGCTACAGTATTTGGGGCAACTGGATTCTTAGGTCGTTATGT
EST: gi|12774559|gb|BG239486.1|BG239486
EST:     GGAGTTGGTCACCTCGTTCGTAAGGGCACTGGTGGACGATCCTCCGTCAG                         TGGCATTATTGCTACAGTATTTGGGGCAACTGGATTCTTAGGTCGTTATGT
genomic: GGAGTTGGTCACCTCGTTCGTAAGGGCACTGGTGGACGATCCTCCGTCAGgtttacctca ... ctttttgcagTGGCATTATTGCTACAGTATTTGGGGCAACTGGATTCTTAGGTCGTTATGT
EST: gi|14258415|gb|BG881323.1|BG881323
EST:     GGAGTTGGTCACCTCGTTCGTAAGGGCACTGGTGGACGATCCTCCGTCAG                         TGGCATTATTGCTACAGTATTTGGGGCAACTGGATTCTTAGGTCGTTATGT
genomic: GGAGTTGGTCACCTCGTTCGTAAGGGCACTGGTGGACGATCCTCCGTCAGgtttacctca ... ctttttgcagTGGCATTATTGCTACAGTATTTGGGGCAACTGGATTCTTAGGTCGTTATGT
EST: gi|209709595|gb|BW661922.1|BW661922
EST:     GGCGTTGGTCACCTCGTTCGTAAGGGCACTGGTGGACGATCCTCCGTCAG                         TGGCATTATTGCTACAGTATTTGGGGCAACTGGATTCTTAGGTCGTTATGT
genomic: GGAGTTGGTCACCTCGTTCGTAAGGGCACTGGTGGACGATCCTCCGTCAGgtttacctca ... ctttttgcagTGGCATTATTGCTACAGTATTTGGGGCAACTGGATTCTTAGGTCGTTATGT
EST: gi|209714364|gb|BW677064.1|BW677064
EST:     GGCGTTGGTCACCTCGTTCGTAAGGGCACTGGTGGACGATCCTCCGTCAG                         TGGCATTATTGCTACAGTATTTGGGGCAACTGGATTCTTAGGTCGTTATGT
genomic: GGAGTTGGTCACCTCGTTCGTAAGGGCACTGGTGGACGATCCTCCGTCAGgtttacctca ... ctttttgcagTGGCATTATTGCTACAGTATTTGGGGCAACTGGATTCTTAGGTCGTTATGT
EST: gi|298174324|gb|HO017660.1|HO017660
EST:     GGAGTTGGTCACCTCGTTCGTAAGGGCACTGGTGGACGATCCTCCGTCAG                         TGGCATTATTGCTACAGTATTTGGGGCAACTGGATTCTTAGGTCGTTATGT
genomic: GGAGTTGGTCACCTCGTTCGTAAGGGCACTGGTGGACGATCCTCCGTCAGgtttacctca ... ctttttgcagTGGCATTATTGCTACAGTATTTGGGGCAACTGGATTCTTAGGTCGTTATGT
EST: gi|192312568|gb|FK005026.1|FK005026
EST:     GGAGTTGGTCACCTCGTTCGTAAGGGCACTGGTGGACGATCCTCCGTCAG                         TGGCATTATAGCTACAGTATTTGGGGCAACTGGATTCTTAGGTCGTTATGT
genomic: GGAGTTGGTCACCTCGTTCGTAAGGGCACTGGTGGACGATCCTCCGTCAGgtttacctca ... ctttttgcagTGGCATTATTGCTACAGTATTTGGGGCAACTGGATTCTTAGGTCGTTATGT
EST: gi|192300056|gb|FG991860.1|FG991860
EST:     GGAGTTGGTCACCTCGTTCGTAAGGGCACTGGTGGACGATCCTCCGTCAG                         TGGCATTATTGCTACAGTATTTGGGGCAACTGGATTCTTAGGTCGTTATGT
genomic: GGAGTTGGTCACCTCGTTCGTAAGGGCACTGGTGGACGATCCTCCGTCAGgtttacctca ... ctttttgcagTGGCATTATTGCTACAGTATTTGGGGCAACTGGATTCTTAGGTCGTTATGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATTATGGAATGGATCACGAGCGTTACGTTTCTACCCTCGCCACCAAGGGAGTTGGTCACCTCGTTCGTAAGGGCACTGGTGGACGATCCTCCGTCAGgtttacctcattccttcttcattctcgctctaggtttttttttttgttttttggattttcgtaatgagattacttgatttatcattattgttggttgagg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccttcttc